Locus 1168

Sequence ID 2L_DroMel_CAF1
Location 3,211,567 – 3,211,661
Length 94
Max. P 0.650485
window1890

overview

Window 0

Location 3,211,567 – 3,211,661
Length 94
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 85.86
Mean single sequence MFE -26.30
Consensus MFE -18.48
Energy contribution -19.88
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.70
SVM decision value 0.24
SVM RNA-class probability 0.650485
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3211567 94 + 22407834
GGCUGGCAUAUGCGAGU-UGCAGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUUGCUCUGCACCUA--UGUGCUUGAGUUCCUA
.....((((...(((((-((((....)))))))))........((((.........))))))))(..((((.((((...--.))))..))))..).. ( -27.50)
>DroSec_CAF1 45748 94 + 1
GGCUGGCAUAUGCGAGU-UGCACCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUUGCUCUGCACCUA--UGUGCUUGAGUUCCUA
.....((((...(((((-((((....)))))))))........((((.........))))))))(..((((.((((...--.))))..))))..).. ( -26.50)
>DroSim_CAF1 44137 94 + 1
GGCUGGCAUAUGCGAGU-UGCAGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUUGCUCUGCACCUA--UGUGCUUGAGUUCCUA
.....((((...(((((-((((....)))))))))........((((.........))))))))(..((((.((((...--.))))..))))..).. ( -27.50)
>DroEre_CAF1 42329 81 + 1
----------------UGUGCCGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUCGCACUGCACCUACAUAUGCACGAGAUUCCA
----------------.((((.((((((((..((((.............))))....)))).)))).))))((((........)))).......... ( -18.22)
>DroYak_CAF1 40809 95 + 1
GGCUGGCAUAUGCGAGUGUGCAGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUCGCGCUGCACCUA--UAUGCUUGGAAUCCUA
..(.(((((((...((.(((((((((........(((....((((((.........))))))..)))))))))))))))--)))))).)........ ( -31.80)
>consensus
GGCUGGCAUAUGCGAGU_UGCAGCGCUGCAAUUUGACUUUAAUGCAUUUUUAAUUUGUGCAUGCGUUGCUCUGCACCUA__UGUGCUUGAGUUCCUA
.(((.((....)).)))..(((((((((((..((((.............))))....)))).)))))))...((((......))))........... (-18.48 = -19.88 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:16 2006