Locus 1163

Sequence ID 2L_DroMel_CAF1
Location 3,183,401 – 3,183,499
Length 98
Max. P 0.578963
window1884

overview

Window 4

Location 3,183,401 – 3,183,499
Length 98
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.62
Mean single sequence MFE -29.70
Consensus MFE -19.60
Energy contribution -20.30
Covariance contribution 0.70
Combinations/Pair 1.13
Mean z-score -1.33
Structure conservation index 0.66
SVM decision value 0.09
SVM RNA-class probability 0.578963
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3183401 98 - 22407834
---------UUUUUCCG--UUCUUCCAGCUUAGCAAAUGGCCACAUCAAUAUGGCUGCCUUCGAUCGAAUGGCCGCCAUUGUUGGUGCAUUCACCAAACACAUGCAGGC
---------........--........((((.(((..((...........(((((.((((((....))).))).)))))..((((((....)))))).))..))))))) ( -26.90)
>DroPse_CAF1 33823 101 - 1
-----UCU-UUGUUUUG--UGUGUGCAGCUUACAAAAUGGCCACAUCAAUAUGGCGGCCUUCGAUCGGAUGGCGGCCAUUGUCGGCGCGUUCACGAAGCACAUGCAGGC
-----...-.(((((((--((..(((.(((.(((..((((((.(((....)))...((((((....))).)))))))))))).))))))..)))))))))......... ( -36.40)
>DroWil_CAF1 21404 90 - 1
----------U---------AUCUACAGAUUACCAAAUGGCCACAUCAAUAUAAAUGCCUUUGAUCGCAUGGCGGCCAUAGUUGGAGCAUUUACCAAGCAUAUGCAGGC
----------.---------............((((((((((.(..........((((........)))).).))))))..)))).((((...........)))).... ( -18.20)
>DroYak_CAF1 19375 107 - 1
UUUCCUCUCUUUUCCCG--CCUUUCCAGCUUAGCAAAUGGCCACAUCAAUAUGGCUGCCUUCGAUCGAAUGGCGGCCAUUGUUGGGGCAUUCACCAAACACAUGCAGGC
................(--(((.((((((...((.....)).........((((((((((((....))).))))))))).))))))((((...........)))))))) ( -31.40)
>DroAna_CAF1 20535 100 - 1
---------AUUUCCCGUUCCGUUGCAGCUUAGCAAAUGGCCACAUCAAUAUGGCAGCCUUCGAUCGCAUGGCGGCCAUUGUUGGGGCAUUCACCAAGCACAUGCAGGC
---------.............(((((((((.(..((((.((.((.((..(((((.(((...........))).))))))).)))).))))..).))))...))))).. ( -28.90)
>DroPer_CAF1 30385 101 - 1
-----UCU-UUGUUUUG--UGUGUGCAGCUUACAAAAUGGCCACAUCAAUAUGGCGGCCUUCGAUCGGAUGGCGGCCAUUGUCGGCGCGUUCACGAAGCACAUGCAGGC
-----...-.(((((((--((..(((.(((.(((..((((((.(((....)))...((((((....))).)))))))))))).))))))..)))))))))......... ( -36.40)
>consensus
_________UUUUUCCG__UCUUUGCAGCUUACCAAAUGGCCACAUCAAUAUGGCUGCCUUCGAUCGAAUGGCGGCCAUUGUUGGCGCAUUCACCAAGCACAUGCAGGC
.......................................(((...((((((((((.((((((....))).))).))))).))))).((((...........)))).))) (-19.60 = -20.30 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:10 2006