| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,181,009 – 3,181,113 |
| Length | 104 |
| Max. P | 0.826207 |
| Location | 3,181,009 – 3,181,113 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 86.11 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -17.77 |
| Energy contribution | -18.52 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3181009 104 - 22407834 GGCGUGGAGUGAAGUUGUCUUUGGGUGUUGCGGCAAAACGCAUCUUGACAGAAGCGGAAGUUAAGAAGUAAAAAUGAGA----AAAAAU----GCCGGAGAAUGAAAACUUA ......((((.......(((((((....((((......))))(((((((..........))))))).............----......----.)))))))......)))). ( -22.32) >DroSim_CAF1 16944 104 - 1 GGCGUGGAGUGAAGUUGUCUUUGGGUGUUGCGGCAAAACGCAUCUUGACAGAAGCGGAAGUUAAGAAGUAAAAAUGAGA----AAAAAU----GCCGGAGAAUGAAAACUUA ......((((.......(((((((....((((......))))(((((((..........))))))).............----......----.)))))))......)))). ( -22.32) >DroYak_CAF1 16925 112 - 1 GGCGUGGAGAGAAGUUGUCUUUGGGUGUUGCGGCAAAACGCAUCUUGACAGAAGCGGAAGUUAAGAAGUAGAAAUGAGAUGAAAAAAAUAAGCGCCGGAGAAUGAAAACUUA (((((.........(..((((.......((((......))))(((((((..........))))))).........))))..).........)))))................ ( -25.17) >DroAna_CAF1 18281 98 - 1 AACAAC-GGUGAAGUUGUCUUUGGGUGUUGCGGCACAACGCAUCUUGACAGAAACGGAAGUUAACAA--AAAAAUGUGU----A--UGU----G-CGGAAAAUGAAAACUUA .(((((-......)))))...(((((....(.(((((((((((.((......(((....))).....--.)).))))))----.--)))----)-).).........))))) ( -22.32) >consensus GGCGUGGAGUGAAGUUGUCUUUGGGUGUUGCGGCAAAACGCAUCUUGACAGAAGCGGAAGUUAAGAAGUAAAAAUGAGA____AAAAAU____GCCGGAGAAUGAAAACUUA ...........(((((.(((((((....((((......))))(((((((..........)))))))............................))))))).....))))). (-17.77 = -18.52 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:07 2006