Locus 116

Sequence ID 2L_DroMel_CAF1
Location 377,033 – 377,142
Length 109
Max. P 0.720067
window175

overview

Window 5

Location 377,033 – 377,142
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.84
Mean single sequence MFE -29.04
Consensus MFE -23.56
Energy contribution -24.36
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.81
SVM decision value 0.40
SVM RNA-class probability 0.720067
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 377033 109 - 22407834
UUAUAUAAGCGGGCCUUAUACAUCCACAGAUCCAUUCCAGCGGCAUUUUGCACUGGAAGCGUCCCC-----------CUCCUUCGACCAUCAUUCGCUGCCCAAUUUGCUUGUAUCGCAA
..((((((((((((.....................(((((..((.....)).)))))((((.....-----------.................)))))))).....))))))))..... ( -24.15)
>DroSec_CAF1 44666 107 - 1
UGAUAUAAGCGGGCCUUAUACAUCGAGAGUUCCAUUCCAGCGGCAUUUUGCACUGGAACCUGCCCC-------------CCUUCGACCAUCAUUCGCUGCCCAAUUUGCUUGUAUCGCAA
.(((((((((((((.........(....).....((((((..((.....)).))))))...)))).-------------....(((.......)))...........))))))))).... ( -27.70)
>DroSim_CAF1 45309 107 - 1
UGAUAUAAGCGGGCCUUAUACAUCGAGAGUUCCAUUCCAGCGGCAUUUUGCACUGGAACCUGCCCC-------------CCUUCGACCAUGAUUCGCUGCCCAAUUUGCUUGAAUCGCAA
........((((((.........(....).....((((((..((.....)).))))))...)))).-------------...........((((((..((.......)).)))))))).. ( -24.50)
>DroEre_CAF1 51660 109 - 1
UGAUAUAAGCGGGCCUUAUACAUCGACGGAUCCAUUCCAGCGGCAUUUUGCACUGGAAGCUGACCC-----------CCUCCUCGACCACCAUUCGCUGCCCAAUUUGCUUGUAUCGCAA
.(((((((((((((........((((.(((((..((((((..((.....)).))))))...))...-----------..)))))))............)))).....))))))))).... ( -30.85)
>DroYak_CAF1 45809 120 - 1
UGAUAUAAGCGGGCCUUAUACAUCGACAGAUCCAUUCCAGCGGCAUUUUGCACUGGAAGCCGGCUCCCCUCCCCGCUCCUCCUCCAGCAGCACUCGCUGCCCAAUUUGCUUGUAUCGCAA
.((((((((((((((......(((....)))...((((((..((.....)).))))))...)))))....................(((((....))))).......))))))))).... ( -38.00)
>consensus
UGAUAUAAGCGGGCCUUAUACAUCGACAGAUCCAUUCCAGCGGCAUUUUGCACUGGAAGCUGCCCC___________C_CCUUCGACCAUCAUUCGCUGCCCAAUUUGCUUGUAUCGCAA
.(((((((((((((.......(((....)))...((((((..((.....)).))))))........................................)))).....))))))))).... (-23.56 = -24.36 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:18 2006