Locus 1157

Sequence ID 2L_DroMel_CAF1
Location 3,166,677 – 3,166,784
Length 107
Max. P 0.672467
window1874

overview

Window 4

Location 3,166,677 – 3,166,784
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 91.54
Mean single sequence MFE -24.98
Consensus MFE -17.88
Energy contribution -18.56
Covariance contribution 0.68
Combinations/Pair 1.04
Mean z-score -2.26
Structure conservation index 0.72
SVM decision value 0.30
SVM RNA-class probability 0.672467
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3166677 107 + 22407834
ACGUAGAUCAAAAUUCAAUUUGUAUAAAUAAUACGAGUAUUUGCGCAAAUUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGCGCAGAUUUAUCAUUGCC
..(((((((........((((((((.....))))))))...((((((.....(((.....)))((((..(......)..))))....)))))))))))))....... ( -28.40)
>DroSec_CAF1 2747 107 + 1
ACUCAGAUCAAAAUUCAAUUUGUAUGAAUAAUACGAGUAUUUGCGCAAAAUUGGCAAAUUGCCUGCAAACUAAACUGGAAGCAAUUGUGCGCUGAUUUAUUAUUGCC
....((((((.......((((((((.....))))))))....(((((.(((((((.....))).((...(......)...)))))).)))))))))))......... ( -23.90)
>DroSim_CAF1 2775 107 + 1
ACUCAGAUCAAAAUUCAAUUUGUAUGAAUAAUACGAGUAUUUGCGCAAAAUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGCGCAGAUUUAUUAUUGCC
....(((((........((((((((.....))))))))...((((((.(((((((.....))).(((..(......)..))))))).)))))))))))......... ( -27.60)
>DroEre_CAF1 3592 101 + 1
ACGCAGAUCAAAAUUCAAUUUGUAUGAAUUAU------AUUUGCUCAAAUUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGUGCAGAUUUAUCAUUGCC
..((((.....((((((.......))))))..------((((((.((.....(((.....)))((((..(......)..))))....)).))))))......)))). ( -20.70)
>DroYak_CAF1 2776 101 + 1
ACGCAGAUCAAAAUUCAAUUUGUGUGAAUUAU------AUUUGCGCAAAUUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGUGCAGAUUUAUCAUUGCC
((((((((.........))))))))....((.------(((((((((.....(((.....)))((((..(......)..))))....))))))))).))........ ( -24.30)
>consensus
ACGCAGAUCAAAAUUCAAUUUGUAUGAAUAAUACGAGUAUUUGCGCAAAUUUGGCAAAUUGCCUGCUAACUAAACUGGAAGCAAUUGUGCGCAGAUUUAUCAUUGCC
....(((((...(((((.......)))))............((((((.....(((.....)))((((..(......)..))))....)))))))))))......... (-17.88 = -18.56 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:00 2006