Locus 1156

Sequence ID 2L_DroMel_CAF1
Location 3,161,786 – 3,161,890
Length 104
Max. P 0.500000
window1873

overview

Window 3

Location 3,161,786 – 3,161,890
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 81.99
Mean single sequence MFE -28.65
Consensus MFE -17.53
Energy contribution -18.40
Covariance contribution 0.87
Combinations/Pair 1.30
Mean z-score -1.73
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3161786 104 - 22407834
UGCAAUGGACUUUGAUUCAAAAAUCUCACAAGACCUACCACAAAUCUGGGCAGGAAUAGGACGCCAGCCUCAUAGUUGGCGAUCCUCAGGCAGGGUUGGAUAUU
.....(.(((((((...................(((.(((......)))..)))...(((((((((((......))))))).))))....))))))).)..... ( -28.20)
>DroSec_CAF1 1809 104 - 1
UGCAUUGAACUUUGAUUCAAAAAUCUCACAAGACCUACCACAAAUCUGGGCAGGAAUAGGACGCCAGCCUCAUAGUUGGCGAUCCUCAGGCAGGGUUGGAUAUU
...(((.(((((((...................(((.(((......)))..)))...(((((((((((......))))))).))))....))))))).)))... ( -30.10)
>DroSim_CAF1 1715 104 - 1
UGCAUUGAACUUUGAUUCAAAAAUCUCACAAGACCUACCACAAAUCUGGGCAGGAAUAGGACGCCAGCCUCAUAGUUGGCGAUCCUCAGGCAGGGUUGGAUAUU
...(((.(((((((...................(((.(((......)))..)))...(((((((((((......))))))).))))....))))))).)))... ( -30.10)
>DroEre_CAF1 1711 104 - 1
UACAACGAACAUAGAUUAAACAAGCUCUCAAAACUUACCACGAAUCUAGGUAGGAAUAGGACGCCAACCUCGUAGUUGGCGAUUCUCAGGCAGGGCUGGAUAUU
......................(((((((....((((((.........))))))...(((((((((((......))))))).))))...).))))))....... ( -26.60)
>DroWil_CAF1 2433 99 - 1
AACUUUGUUUUUUGUUGUGGAUGUUUUA-----CAUACCACAAAUCUUGGUAGGAAUAGGACACCUGCCUCAUAGUUGGCAAUGCGUAGACAUGGUUGGAUAUU
((((.(((((.((((((((((((.....-----))).)))).......((((((.........))))))........))))).....))))).))))....... ( -23.20)
>DroYak_CAF1 1713 104 - 1
UACAAUUAACUUUGAUUUAACAAUCGCACCAAACCUACCACGAAUCUGGGUAGGAAUAGGACGCCAACCUCGUAGUUGGCGAUCCUCAGGCAGGGUUGAAUAUU
.....((((((((((((....))))((......((((((.((....))))))))...(((((((((((......))))))).))))...))))))))))..... ( -33.70)
>consensus
UACAAUGAACUUUGAUUCAAAAAUCUCACAAGACCUACCACAAAUCUGGGCAGGAAUAGGACGCCAGCCUCAUAGUUGGCGAUCCUCAGGCAGGGUUGGAUAUU
.....(.(((((((...................(((.((.........)).)))....((((((((((......))))))).))).....))))))).)..... (-17.53 = -18.40 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:59 2006