Locus 1153

Sequence ID 2L_DroMel_CAF1
Location 3,149,217 – 3,149,318
Length 101
Max. P 0.629492
window1867

overview

Window 7

Location 3,149,217 – 3,149,318
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 89.75
Mean single sequence MFE -19.79
Consensus MFE -17.78
Energy contribution -17.87
Covariance contribution 0.09
Combinations/Pair 1.14
Mean z-score -1.31
Structure conservation index 0.90
SVM decision value 0.20
SVM RNA-class probability 0.629492
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3149217 101 - 22407834
UUAUUAUUUAUAUUUGCUUUUUACUUGCUCUUUUCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCGGC
.............(((((....................(((((((.(....).))))))).....((((...(((((....)))))..))))...))))). ( -19.80)
>DroSec_CAF1 4804 101 - 1
UUAUUAUUUAUAUUUGCUUUUUACUUGCUCUUUCCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCAGC
.............(((((....................(((((((.(....).))))))).....((((...(((((....)))))..))))...))))). ( -20.60)
>DroSim_CAF1 4967 101 - 1
UUAUUAUUUAUAUUUGCUUUUUACUUGCUCUUUCCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCAGC
.............(((((....................(((((((.(....).))))))).....((((...(((((....)))))..))))...))))). ( -20.60)
>DroEre_CAF1 3951 100 - 1
UUAUUAUUUAUGUGUGCUUU-UACUUGCUCUUUUCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCAGC
..........((((.((...-.....))......))))(((((((.(....).)))))))...(((......(((((....)))))........))).... ( -21.44)
>DroYak_CAF1 6866 100 - 1
UUAUUAUUUAUAUUAGCUUU-UUCUUGCUCUUUUCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCACC
....................-....((((.........(((((((.(....).))))))).....((((...(((((....)))))..))))...)))).. ( -20.00)
>DroMoj_CAF1 4624 92 - 1
GUCUAACG--UAUUUGC------AUUGGUCUAUUCACAGACUAUCCGCCCGUUGAUAGUUAUACCGGUUAUCGGGUAACUCCACCCCAAAACAACAACAA-
(((.((((--.....((------..((((((......))))))...)).)))))))((((((.(((.....)))))))))....................- ( -16.30)
>consensus
UUAUUAUUUAUAUUUGCUUU_UACUUGCUCUUUUCACAGACUAUCCGCCCGCUGAUAGUUAUACCGGUUAUCGGGUGACUCCACCCCAAAUCAACGGCAGC
.........................((((.........(((((((.(....).))))))).....((((...(((((....)))))..))))...)))).. (-17.78 = -17.87 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:54 2006