| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,142,008 – 3,142,102 |
| Length | 94 |
| Max. P | 0.576784 |
| Location | 3,142,008 – 3,142,102 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 88.05 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -18.73 |
| Energy contribution | -18.98 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3142008 94 - 22407834 UAUAUA----------UAUGUAUACUAUUCCCUCUAGCUGAUCCACUAUUGGCUUGCCAUUUAUGAUUUAUGCUGGCGGCGGUGGCAUUUGUGUAUUGACUCAA ((((((----------.(((....((((..((.(((((.((((......(((....))).....))))...))))).))..))))))).))))))......... ( -22.50) >DroSec_CAF1 66771 88 - 1 UAU----------------GUGUACUAUUCCCACUAGCUGAUCCACUAUUGGCUUGCCAUUUAUGAUUUAUGCUGGCGGCGGUGGCAUUUGUGUAUUGACUCAA ...----------------.....((((..((.(((((.((((......(((....))).....))))...))))).))..))))...(((.((....)).))) ( -19.70) >DroSim_CAF1 70078 94 - 1 UAUGUA----------UAUGUAUACUAUUCCCACUAGCUGAUCCACUAUUGGCUUGCCAUUUAUGAUAUAUGCUGGCGGCGGUGGCAUUUGUGUAUUGACUCAA ...(((----------((((.((.((((..((.(((((..(((......(((....))).....)))....))))).))..)))).)).)))))))........ ( -21.70) >DroEre_CAF1 68388 104 - 1 GAUAUAUAUAUGUACAUAUGUAUACUAUUCCCACUAGCUGAUCCACUGUUGGUUUGCCAUUUAUGAUUUAUGCUGGUGGCGGUGGCAUUUGUGUAUUGACUCAA ((((((((..(((((....)))))((((..((((((((.((((......(((....))).....))))...))))))))..))))....))))))))....... ( -30.00) >consensus UAUAUA__________UAUGUAUACUAUUCCCACUAGCUGAUCCACUAUUGGCUUGCCAUUUAUGAUUUAUGCUGGCGGCGGUGGCAUUUGUGUAUUGACUCAA ........................((((..((.(((((.((((......(((....))).....))))...))))).))..))))...(((.((....)).))) (-18.73 = -18.98 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:53 2006