Locus 1151

Sequence ID 2L_DroMel_CAF1
Location 3,126,592 – 3,126,712
Length 120
Max. P 0.748406
window1865

overview

Window 5

Location 3,126,592 – 3,126,712
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.11
Mean single sequence MFE -26.76
Consensus MFE -20.73
Energy contribution -21.35
Covariance contribution 0.62
Combinations/Pair 1.15
Mean z-score -1.93
Structure conservation index 0.77
SVM decision value 0.47
SVM RNA-class probability 0.748406
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3126592 120 + 22407834
CUCUAUCAAUGGAUUUUGUUAGAUUGGAUGCUGCGUCCAUUGUUAUGGUUAAGUUUUGUCCAACUUCUAUGGUUUUCGUAGUACUUCGUCCUUUGUCUAUUGUCCUAGAGACUUCUUCAU
(((((.((((((((......((..(((((((((((.((((.(...(((...........)))....).))))....))))))).))))..))..))))))))...))))).......... ( -28.50)
>DroSec_CAF1 51556 120 + 1
CUCUAUCAAUGGAUUUUGUAAGAUUGGAUGCUGCGUCCAUUGUUAUGGUUAAAUUUUGUCCAGCUUGUAUGGUUUUUGUAGUACUUCGUCCUUUGUCUAUUGUCCUAGAGACUUCUUCAU
(((((.((((((((.....(((..(((((((((((.((((.....(((...........)))......))))....))))))).))))..))).))))))))...))))).......... ( -29.10)
>DroSim_CAF1 53573 120 + 1
CUCUAUCAAUGGAUUUUGUAAGAUUGGAUGCUGUGUCCAUUGUUAUGGUUAAAUUUUGUCCAGCUUGUAUGGUUUUUGUAUUACUUCGUCCUUUGUGUAUUGUCCUAGAGAAUUGUUCAU
(((((.(((((.((.......((...(((((.....((((.....(((...........)))......)))).....)))))...)).......)).)))))...))))).......... ( -21.14)
>DroEre_CAF1 53031 120 + 1
CUCUAUCAAUGAAAUUUCUAGGAUUGGAUGCUGAGUCUAUUGUUGUGGUUACAUUUUGUUCAGUUUCUAUGGUUUUUGUAGUACUUCGUCCUUUGUCUAUUGUCCUAGAGAAUUCUUCUU
..........(((.((((((((((.(((((..((((((((.(..((((..((..........))..))))..)....)))).)))))))))..........)))))))))).)))..... ( -28.30)
>consensus
CUCUAUCAAUGGAUUUUGUAAGAUUGGAUGCUGCGUCCAUUGUUAUGGUUAAAUUUUGUCCAGCUUCUAUGGUUUUUGUAGUACUUCGUCCUUUGUCUAUUGUCCUAGAGAAUUCUUCAU
(((((.((((((((.....(((..(((((((((((.((((.....(((...........)))......))))....))))))).))))..))).))))))))...))))).......... (-20.73 = -21.35 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:52 2006