Locus 1150

Sequence ID 2L_DroMel_CAF1
Location 3,126,391 – 3,126,482
Length 91
Max. P 0.500000
window1864

overview

Window 4

Location 3,126,391 – 3,126,482
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 83.77
Mean single sequence MFE -31.32
Consensus MFE -19.92
Energy contribution -21.92
Covariance contribution 2.00
Combinations/Pair 1.18
Mean z-score -2.22
Structure conservation index 0.64
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3126391 91 + 22407834
UUUCCUGGCUCGGUCUCUCGACGUUG---CCAGAACACUUGGAACUCAGAAUGUCCAAGCCAGAUGGCAUGGAUAUGUGUUCCAGCAGGGGUAA
....(((((...(((....)))...)---)))).....(((((((.....(((((((.(((....))).)))))))..)))))))......... ( -33.50)
>DroSec_CAF1 51355 91 + 1
UUUCCUGGCCCAGUUUCUCAACGUUG---CCGGAACACUUGGAACUCAGAAUGUCCAAGCCAGAUGGCAUGGAUAUGUGUUCCAGCAGGGGUAA
.......((((.(((....))).(((---(.((((((((((.....))).(((((((.(((....))).)))))))))))))).)))))))).. ( -34.50)
>DroSim_CAF1 52502 91 + 1
UUUCCUGGCCCAGUUUCUCAACGUUG---CCGGAACACUUGGAACUCAGAAUGUCCAAGCCAGAGGGCAUGGAUAUGUGUUCCAACCAGGGUAG
..((((((....(((((.........---..)))))..(((((((.....(((((((.(((....))).)))))))..)))))))))))))... ( -33.50)
>DroEre_CAF1 52830 91 + 1
UUUCCUGGUCCAGUUUCUCAAUGUUG---CCGGUACACUUGGAACUCAGAAUGUCCAAGCCAGAUGGCAUGGAUAUGUGUUCCAGCAGGGGUAA
.((((((((((.((..(.....)..)---).)).))..(((((((.....(((((((.(((....))).)))))))..)))))))))))))... ( -32.80)
>DroYak_CAF1 53290 91 + 1
UUUCCUGGUCCAGUUUCUCCAUGUUG---CCGGAACACUUGGAACUCAGAAUAUCCAAGCCAGAUGGCAUGGAUAUGUGUUCGAGCAGGGGUAA
.((((((.((..(((((..(.....)---..))))).....((((.....(((((((.(((....))).)))))))..)))))).))))))... ( -30.20)
>DroAna_CAF1 56964 94 + 1
UUUCCUGCUCCAUAUUGUCCACUUCCCCUCCAGAACUCUUAAGGCUGAGGAUGUCAAGGCCCGAUGGAAUGGACAUGUGUUCGAUCAAAGGCAG
....(((((....((((..(((.(((..(((((....)....((((...(....)..))))...))))..)))...)))..))))....))))) ( -23.40)
>consensus
UUUCCUGGCCCAGUUUCUCAACGUUG___CCGGAACACUUGGAACUCAGAAUGUCCAAGCCAGAUGGCAUGGAUAUGUGUUCCAGCAGGGGUAA
.((((((.....(((((..............)))))..(((((((.....(((((((.(((....))).)))))))..)))))))))))))... (-19.92 = -21.92 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:51 2006