| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,124,098 – 3,124,195 |
| Length | 97 |
| Max. P | 0.568684 |
| Location | 3,124,098 – 3,124,195 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 73.71 |
| Mean single sequence MFE | -44.58 |
| Consensus MFE | -24.39 |
| Energy contribution | -26.20 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3124098 97 - 22407834 CGCCCCCACAC-----GCGACCCCGCCAACACGGCAGCCACUGGAUAAAGGCUCAGUUGGCGCCGGGUCGGUGGGUGGUGGU---GGCGCUCGUGCGGUAAAGAC (((((((((..-----.(((((((((((((...(.((((..........))))).)))))))..))))))))))).)))).(---(.(((....))).))..... ( -46.30) >DroSec_CAF1 49090 97 - 1 CGCCCCCACAC-----GCGACCCCGCCAACACGGCAGCCACUGGAUAAAGGCUCAGUUGGUGCCGGGUCGGUGGGUGGUGGU---GGCGGCCGUGCGGGGAAGAC ..(((((((.(-----((.((((((((.((.(((((.(((((((........)))).)))))))).....)).))))).)))---.)))...))).))))..... ( -49.00) >DroEre_CAF1 50526 97 - 1 CGCCCCCACAC-----GCGACCCCGCCAACACGGCAGCCACUGGAUAAAGGCUCAGUUGGCGCCGGGUCAGUGGGUGGUGGU---GGCGUCCGAGCGGGGAAGAC ...((((.(((-----((.((((((((.((.((((.((((((((........)))).)))))))).....)).))))).)))---.))))....).))))..... ( -45.80) >DroWil_CAF1 79667 88 - 1 CUCCGCCGCUC-----GC------AUUGGCACGGCAGCCACAGGAUAAAGGCUCAGUUGGUGCGAG-U-GGUG-GUGCAGGU---GGCGCAGGUGGUGCAAAUGG ..(((((((((-----((------((..((...(.((((..........))))).))..)))))))-)-))))-)..((...---.((((.....))))...)). ( -40.60) >DroYak_CAF1 50966 100 - 1 CGCCCCCACAC-----GCGACCCCGCCAACACGGCAGCCACUGGAUAAAGGCUCAGUUGGCGCCGGGUCGGUGGGUGGUGGUUGUGGCUCACGUGCCGGGAAGAC (((((((((..-----.(((((((((((((...(.((((..........))))).)))))))..))))))))))).)))).((.((((......)))).)).... ( -48.50) >DroPer_CAF1 62140 93 - 1 GGCGGCCACACCAUCACCGCCACCGUCAACGCGGCAGCCACAGGAUAAAGGCUCAGUUGGCAACGGCGCU------GCUGGUGUCGGCACACG------GUCUAG (((.(((((((((.((.((((...((((((...(.((((..........))))).))))))...)))).)------).)))))).))).....------)))... ( -37.30) >consensus CGCCCCCACAC_____GCGACCCCGCCAACACGGCAGCCACUGGAUAAAGGCUCAGUUGGCGCCGGGUCGGUGGGUGGUGGU___GGCGCACGUGCGGGGAAGAC (((((((((........(((((((((((((...(.((((..........))))).)))))))..))))))))))).))))......................... (-24.39 = -26.20 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:50 2006