Locus 1146

Sequence ID 2L_DroMel_CAF1
Location 3,118,076 – 3,118,189
Length 113
Max. P 0.650184
window1860

overview

Window 0

Location 3,118,076 – 3,118,189
Length 113
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 87.15
Mean single sequence MFE -23.53
Consensus MFE -17.06
Energy contribution -17.38
Covariance contribution 0.32
Combinations/Pair 1.14
Mean z-score -1.79
Structure conservation index 0.73
SVM decision value 0.24
SVM RNA-class probability 0.650184
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3118076 113 - 22407834
AAUUAAAUUUCCAUUGCAAGUAAUUGGAUUUGUGGGGAAAUUGCCUUUGCUGGGCUGGCAUUAACUACUCAUAAAUCAAAAUGUGCUUUCAACAUUAAAACUCGUAUCU--ACGA
.............(((.(((((....((((((((((.....((((...((...)).)))).......))))))))))......))))).))).........((((....--)))) ( -24.20)
>DroSec_CAF1 43132 110 - 1
AAUUAAAUUUCCAUUGCAGGUAAUUGGAUUUGUGGGUGAAUUGCCUUUGCU-----GGCAUUAACUACUCAUAAAUCAAAAUGUGCUUUCAACAUUUAACUUUUUAUCUUCACGA
..............((.((((((...((((((((((((...((((......-----)))).....)))))))))))).((((((.......))))))......)))))).))... ( -27.00)
>DroSim_CAF1 43558 97 - 1
AAUUAAAUUUCCAUUGCAGGUAAUUGGAUUUGUGGGUGAAUUGCCUUUGCU-----GGCAUUAACUACUCAUAAAUCAAAAUGUGCUUUCAACAUUUAA-------------CGA
..((((((.......(((.((.....((((((((((((...((((......-----)))).....))))))))))))...)).))).......))))))-------------... ( -24.94)
>DroEre_CAF1 44050 107 - 1
AAUUAGAUUUCCAUUGCAGGAAAUUGGAUUUGCGGGGAAAUUGCCUUUGCU-----GGCAUUAACUAUUCAUAAAUCAAAAUGUGCUUUCAACAUUUAAC-UCAUUUCU--ACGA
((((.(((((((......))))))).))))..((..(((((((((......-----))))..................((((((.......))))))...-..))))).--.)). ( -22.00)
>DroYak_CAF1 44482 107 - 1
AAUUAAAUUUCCAUUGCUGGUAAUUGGAUUUGUAGGGAAAUUGCCUUUGCU-----GGCAUCAACUACUCAUAAAUCAAAAUGUGCUUUCAGCAUUUAAC-UCAUUUCU--ACGA
..............((((((((....(((((((..(.....((((......-----)))).......)..)))))))......)))...)))))......-........--.... ( -19.50)
>consensus
AAUUAAAUUUCCAUUGCAGGUAAUUGGAUUUGUGGGGAAAUUGCCUUUGCU_____GGCAUUAACUACUCAUAAAUCAAAAUGUGCUUUCAACAUUUAAC_UCAUAUCU__ACGA
.............(((.(((((....((((((((((.....((((...........)))).......))))))))))......))))).)))....................... (-17.06 = -17.38 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:47 2006