Locus 1144

Sequence ID 2L_DroMel_CAF1
Location 3,113,027 – 3,113,141
Length 114
Max. P 0.821003
window1858

overview

Window 8

Location 3,113,027 – 3,113,141
Length 114
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 83.21
Mean single sequence MFE -31.76
Consensus MFE -16.88
Energy contribution -17.60
Covariance contribution 0.72
Combinations/Pair 1.14
Mean z-score -2.65
Structure conservation index 0.53
SVM decision value 0.68
SVM RNA-class probability 0.821003
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3113027 114 - 22407834
AAAACACAAGUAAAUAAGAAAUGCAACGAAAAUCGUUGGGGAAUACGUUGUU-UGGGGGAUAAAUCCCUCAAACGUUUAGAUCUCACAAUCACCCACUGCCA---CUCUCCUUGUAGA
.....(((((.............(((((.....)))))(((........(((-(((((((....)))))))))).....(((......))).))).......---.....)))))... ( -30.30)
>DroSec_CAF1 38143 118 - 1
AAAACACAAUAAAGCAAGAAAUGCAACGAAAAUCGAUGGGGAAUACGUUGUUUUGGGGGAUAAAUCCCUCAAACGUUUGGAUCGCAAAAUUCCCCACUGCCAUCUCCUUCCUUGUAGA
.....((((..(((..(((...(((.((.....)).((((((((...(((((((((((((....)))))))))..........)))).)))))))).)))..))).)))..))))... ( -31.50)
>DroSim_CAF1 38499 117 - 1
AAAACACAAUAAAGCAAGAAAUGCAACGAAAAUCGAGGGGGAAUACGUUGUU-UGGGGGAUAAAUCCCUCAAACGUUUGGAUCGUCCAAUUCCCCACUGCCAUCUCCUUCCUUGUAGA
.....((((..(((..(((...(((.((.....))..(((((((.....(((-(((((((....))))))))))...(((.....))))))))))..)))..))).)))..))))... ( -36.40)
>DroEre_CAF1 38791 111 - 1
A-AUCCCAAUUAUCUAGGUAAUGCAACGGAAGUCGGUGGGGAACACGGUGUUUUGGGGGAUAAAUCCCUCAAACGUUUGGAUUCCACAAU--GCCACUGCCAUCU----UCUUGUAGA
.-......(((((....)))))(((..(((((.((((((((((..(((...(((((((((....)))))))))...)))..)))).....--.))))))....))----))))))... ( -31.20)
>DroYak_CAF1 39407 112 - 1
AAAUACCAAUUAACUAAGAAAUGCAACGGAAAUCAAUGGGGAAUACGUUGUUUAGGGGGAUAAAUCCCUCAAACGUUUGGAUUUCCAAAU--CCCACUGCCAUCU----CCUUGUAGA
.....................(((((.(((.((((.((((.........((((.((((((....))))))))))((((((....))))))--)))).))..)).)----))))))).. ( -29.40)
>consensus
AAAACACAAUUAACUAAGAAAUGCAACGAAAAUCGAUGGGGAAUACGUUGUUUUGGGGGAUAAAUCCCUCAAACGUUUGGAUCGCACAAU__CCCACUGCCAUCUC__UCCUUGUAGA
.............(((((....((((((....((......))...))))))(((((((((....))))))))).....................................)))))... (-16.88 = -17.60 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:45 2006