| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,110,728 – 3,110,823 |
| Length | 95 |
| Max. P | 0.890331 |
| Location | 3,110,728 – 3,110,823 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.19 |
| Mean single sequence MFE | -17.81 |
| Consensus MFE | -12.22 |
| Energy contribution | -12.67 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3110728 95 - 22407834 AUUACUGAGCUUGUAAGCUACUGCUAAUCUUUGCACGAAUUGAUAGUUCAAGCAGCAUAAAGAAUUCUCGCUGUUAGCUUUCCAGUCAGUUUUUC ...(((((.((.(.(((((..(((........))).((((.....)))).((((((.............))))))))))).).)))))))..... ( -20.42) >DroSec_CAF1 35848 73 - 1 AUUACUGAGCUUCCACGCUACUGCUAAUCUUUGCAGGAAUUGAUAGUUCAAGCAGC----------------------CUUUCCGUCUGUUUUUC ......(((((..((.....((((........))))....))..)))))((((((.----------------------(.....).))))))... ( -15.40) >DroSim_CAF1 36137 73 - 1 AUUACUGAGCUUCCAAGCUACUGCUAAUCUUUGCAGGAAUUGAUAGUUCAAGCAGC----------------------CUUUCCGUCUGUUUUUC ......(((((..(((....((((........))))...)))..)))))((((((.----------------------(.....).))))))... ( -17.60) >consensus AUUACUGAGCUUCCAAGCUACUGCUAAUCUUUGCAGGAAUUGAUAGUUCAAGCAGC______________________CUUUCCGUCUGUUUUUC .....((((((..(((....((((........))))...)))..))))))............................................. (-12.22 = -12.67 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:43 2006