Locus 1140

Sequence ID 2L_DroMel_CAF1
Location 3,107,883 – 3,107,974
Length 91
Max. P 0.500000
window1853

overview

Window 3

Location 3,107,883 – 3,107,974
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 91.21
Mean single sequence MFE -18.60
Consensus MFE -13.72
Energy contribution -14.44
Covariance contribution 0.72
Combinations/Pair 1.13
Mean z-score -1.64
Structure conservation index 0.74
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3107883 91 + 22407834
AAACUAUGAAUCAUUUAUGUGUUAUUUCUGACCCGCCUGCAAUUUGCAGUUUCAAUAGACUAUAGAUAACAUUAAAUGAUUGAUUUUUGAU
.....((.(((((((((.((((((((((((......((((.....))))......)))).....))))))))))))))))).))....... ( -20.00)
>DroSec_CAF1 33181 91 + 1
AAACUAUGAAUCAUUUAUGUGCAUAGUCUGACCCGUCUGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACAUUAAAUGAUUGAUUUUUGAU
.....((.((((((((((((.((((((((.......((((.....)))).......))))))).)...))).))))))))).))....... ( -20.84)
>DroSim_CAF1 33383 91 + 1
AAACUAUGAAUCAUUUAUGUGCAUAGUCUGACCCGUCUGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACAUUAAAUGAUUGAUUUUUGAU
.....((.((((((((((((.((((((((.......((((.....)))).......))))))).)...))).))))))))).))....... ( -20.84)
>DroEre_CAF1 33588 87 + 1
AAACUAUGAAUCAUUUAUGUGAAGAGUCUGACC----AGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACACUCAAUGAUUGAUUUUUGAU
.....((.(((((((...(((....(.((....----))).((((((((((......))))))))))..)))..))))))).))....... ( -16.00)
>DroYak_CAF1 34081 91 + 1
AAACUAUGAGUCAUUUAUGUGAAGAGUCUGACCCGCCUGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACACUCAAUGAUUGAAUUUUGAU
......(.(((((((...(((.((.((.......))))...((((((((((......))))))))))..)))..))))))).)........ ( -15.30)
>consensus
AAACUAUGAAUCAUUUAUGUGAAGAGUCUGACCCGCCUGCAAUUUGUAGUUUCAAUGGACUAUAGAUAACAUUAAAUGAUUGAUUUUUGAU
......(.((((((((((((....((((((......((((.....))))......)))))).......))).))))))))).)........ (-13.72 = -14.44 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:40 2006