Locus 1138

Sequence ID 2L_DroMel_CAF1
Location 3,099,226 – 3,099,318
Length 92
Max. P 0.833317
window1850

overview

Window 0

Location 3,099,226 – 3,099,318
Length 92
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 77.63
Mean single sequence MFE -18.21
Consensus MFE -9.28
Energy contribution -9.48
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.51
SVM decision value 0.72
SVM RNA-class probability 0.833317
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3099226 92 + 22407834
ACCUU----UU------------------UUCUUUUAAAUUUAUCUGGAAUUCCCUCUUACUUAACCUUAAGCUGUUUGCCCCGUUUGUCACAAAAAAGGUGAUGGCUUAUCAU
.....----..------------------.................((....))..............(((((((.(..((...((((...))))...))..)))))))).... ( -11.80)
>DroSec_CAF1 24479 109 + 1
ACCUU----UUCAGCCAUUGCCAGGCUCUUUUAUUUAUAUUUAUCUGGAAUUUCCUCUUAUUUAACAUAAAGUUGUUUGCCCCCUUUGUCACCAA-AAGGUGAUGGCUUAUCAU
.....----...((((((..((.(((.......(((((.((.....(((......))).....)).))))).......)))...((((....)))-).))..))))))...... ( -22.54)
>DroSim_CAF1 24615 109 + 1
ACCUU----UUUAGCCAUUGCCAGGUUCUUUUAUUUAUAUUUAUCUGGAAUUUUCUCUUAUUUAACAUUAAGUUGUUUGCCCCCUUUGUCACCAA-AAGGUGAUGGCUUAUCAU
.....----...((((((..((.(((......(((((...(((...(((......)))....)))...))))).....)))...((((....)))-).))..))))))...... ( -20.30)
>DroEre_CAF1 24744 113 + 1
ACAUUUCACUAUAGCCACAGUCAGACUCUUUCAUUUAUAUUUAUCUUGAAUUUCCUCUAAUUUAACCUUAAGUUGUUUGCCUCUUUUGUCACCGA-AAGGUGAUGGCUUAUCUU
............((((..((.(((((............(((((..(((((((......)))))))...))))).))))).)).....((((((..-..))))))))))...... ( -22.52)
>DroYak_CAF1 25337 113 + 1
ACUAUAUAUUAUAUUUAUAACCAAACUCUUUCACUUAUAUUUAUCUUGCAUUUUCUCCUAUUUAACCAUAAGUUGUUUGCCCCUUUUGUCACCAA-AAGGUGAUGGCUUAUCAG
...................................................................((((((..((....(((((((....)))-)))).))..))))))... ( -13.90)
>consensus
ACCUU____UUUAGCCAUAGCCAGACUCUUUCAUUUAUAUUUAUCUGGAAUUUCCUCUUAUUUAACCUUAAGUUGUUUGCCCCCUUUGUCACCAA_AAGGUGAUGGCUUAUCAU
..............................................................................(((......((((((.....)))))))))....... ( -9.28 =  -9.48 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:37 2006