Locus 1135

Sequence ID 2L_DroMel_CAF1
Location 3,094,768 – 3,094,861
Length 93
Max. P 0.947094
window1847

overview

Window 7

Location 3,094,768 – 3,094,861
Length 93
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 94.07
Mean single sequence MFE -29.10
Consensus MFE -24.88
Energy contribution -24.24
Covariance contribution -0.64
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.85
SVM decision value 1.37
SVM RNA-class probability 0.947094
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3094768 93 + 22407834
UAUCAAUGCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAACGCCAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGGGA
..(((.((((((((..(((....))).))))((..(((((...........))))).))))))..))).(((.((.(((....)))--)).))). ( -26.10)
>DroSec_CAF1 19532 95 + 1
UAUCAAUGCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAGCGCAAGAAUCUGCAUCUGCAACUGAAUCCGAAUCUCAAUUCGGUGCUGGGGA
..((...(((((.......(((.((.(((((....(((((...(....)..))))).))))).)))))....((((....)))))))))...)). ( -29.00)
>DroSim_CAF1 19598 95 + 1
UAUCAAUGCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAGCGCAAGAAUCUGCAUCUGCAACUGAAUCCGAAUCUCAAUUCGGUGCUGGGGA
..((...(((((.......(((.((.(((((....(((((...(....)..))))).))))).)))))....((((....)))))))))...)). ( -29.00)
>DroEre_CAF1 19885 93 + 1
UAUCAAUGCACUUGAACGGUCAAGUGGCAGGGAGCGCAGAAAACGCAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGGGA
..(((...(((((((....)))))))(((((....(((((...(....)..))))).)))))...))).(((.((.(((....)))--)).))). ( -31.50)
>DroYak_CAF1 20508 93 + 1
UAUCAAUGCACUUGAACACUCAAGUGGCAGGGAGCGCAGAAAACGAAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGAGA
..(((...(((((((....)))))))(((((....(((((...(....)..))))).)))))...))).(((.((.(((....)))--))))).. ( -29.90)
>consensus
UAUCAAUGCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAACGCAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG__CUGGGGA
..........(((.(....(((.((.(((((....(((((...(....)..))))).))))).)))))..((((((....))))))...).))). (-24.88 = -24.24 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:34 2006