| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,081,494 – 3,081,586 |
| Length | 92 |
| Max. P | 0.839892 |
| Location | 3,081,494 – 3,081,586 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 71.81 |
| Mean single sequence MFE | -22.41 |
| Consensus MFE | -4.49 |
| Energy contribution | -5.68 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.20 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3081494 92 + 22407834 AUUCACCCAGCUGUGGAUCCA-CCACGC---UUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAUAACAAAACAAAAA-- ........(((.((((.....-))))))---)......(((----((..((.((((((....))))))-----..))..))))).....................-- ( -21.10) >DroSec_CAF1 6620 97 + 1 AUUCACCCAGCUGUGGAUCCA-CCAUGCUUCUUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAGACCAAAACAAAAACA ........(((.((((.....-)))))))((((.....(((----((..((.((((((....))))))-----..))..))))).....)))).............. ( -20.90) >DroSim_CAF1 6592 92 + 1 AUUCACGCAGCUGUGGAUCCA-CGUCGC---UUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAGACCAAAACAAAAA-- ......(((((((((....))-))..))---)......(((----((..((.((((((....))))))-----..))..)))))))...................-- ( -21.90) >DroEre_CAF1 6566 85 + 1 AUUCACCCAGCUGUGGAUCAA-CCACGC---UUCUCCAAA--GGCAAAAAAAGAUUGCUUGAGUAAUU-----GCUUCGUGCCCGCAAAGAAA-------A--AA-- .(((....(((.((((.....-))))))---)........--((((..((..((((((....))))))-----..))..))))......))).-------.--..-- ( -19.20) >DroYak_CAF1 6654 95 + 1 AUUCACCCAGCUGUGGCUCCA-ACACGC---UUCUGCAGGCCAACAGAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAGAGG-CAAAACAAAAA-- ............(((......-.)))((---((((...(((((...(((...((((((....))))))-----..))).)))))....)))))-)..........-- ( -27.80) >DroAna_CAF1 9267 85 + 1 AUUCACCUAACUCCGAGUCUAACCUUGC---UG--GCAAGG----GAAAAA-AAG--UAUGAGGCAUCAUGCCACUUCGUGGCGGAGGAAAA--------AAGAC-- ..........((((((((((..(((((.---..--.)))))----......-...--....)))).))..(((((...))))))))).....--------.....-- ( -23.56) >consensus AUUCACCCAGCUGUGGAUCCA_CCACGC___UUCUCCAGGC____CAAAAAAAAUUACAUGAGUAAUU_____GCUUCGUGGCCGCAAAAAGA_CAAAACAAAAA__ ...(((..(((.(((........)))..........................((((((....)))))).....)))..))).......................... ( -4.49 = -5.68 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:33 2006