Locus 1131

Sequence ID 2L_DroMel_CAF1
Location 3,071,875 – 3,071,971
Length 96
Max. P 0.859130
window1842

overview

Window 2

Location 3,071,875 – 3,071,971
Length 96
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.21
Mean single sequence MFE -31.58
Consensus MFE -19.60
Energy contribution -20.02
Covariance contribution 0.42
Combinations/Pair 1.26
Mean z-score -1.84
Structure conservation index 0.62
SVM decision value 0.82
SVM RNA-class probability 0.859130
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3071875 96 + 22407834
AGU-UUGCGCGGAAGUCGCACAAAGGCAAAUUGUUGAGUGGCAAUGUCGCGGAGACAAUGUCUCU-------GAGCCAGGGAAUUUCCGCGGCAAGACAAU------GGC
.((-((((((....).)))..........((((((....))))))((((((((((.....(((((-------(...)))))).)))))))))).))))...------... ( -32.60)
>DroSec_CAF1 2176 96 + 1
AGU-UUGCGCGGAAGUCGAACAAAGGCAAAUUGCUGAGUGGCAAUGUCGCGGAGACAAUGUCUCU-------GAGCCAGGGAAUUUCCGCGGCAAGACAAU------GGC
.((-(((.((....)))))))....((..((((((....))))))((((((((((.....(((((-------(...)))))).))))))))))........------.)) ( -34.90)
>DroSim_CAF1 2131 96 + 1
AGU-UUGCGCGGAGGUCGCACAAAGGCAAAUUUUUGAGUGGCAAUGUCGCGGAGACAAUGUCUCU-------GAGCCAGGGAAUUUCCGCGGCAAGACAAU------GGC
.((-((........(((((.((((((....)))))).)))))..(((((((((((.....(((((-------(...)))))).)))))))))))))))...------... ( -33.30)
>DroEre_CAF1 2107 82 + 1
AGU-UUGCGCGGAAGUCGGACAAAGCCGAAUUGUUGAGUGGUAA--------------UGCCUCU-------GAGCCAGGGAAUUUCCGCGGGAGGACAAU------GGC
.((-((.((((((((((((......))))...(((.((.((...--------------..)).))-------.))).......))))))))...))))...------... ( -25.90)
>DroYak_CAF1 2133 82 + 1
AGU-UUGCGCGGAAGUCGCACAAAGGCAAAUUGUUGAGUGGCAA--------------UGUCUUU-------GAGCCAGGGAAAUUCCGCGGGAAGACAAU------GGC
..(-((.(((((((.((((.((((((((..(((((....)))))--------------)))))))-------).))...))...))))))).)))......------... ( -27.30)
>DroAna_CAF1 4340 108 + 1
AGUUUUGCGCGGAAGUCGCACAAAAGGCGACAUUUGAGUGGCAAUCUUGCGGAGACAAUGUCUCUGACCUCUGAUCCGGGGAAUU-CCGCCAG-GGACAAUGAUAGAGGU
.((((((.(((((((((((.((((.(....).)))).))))).......(((((((...))))))).((((......))))..))-)))))).-))))............ ( -35.50)
>consensus
AGU_UUGCGCGGAAGUCGCACAAAGGCAAAUUGUUGAGUGGCAAUGUCGCGGAGACAAUGUCUCU_______GAGCCAGGGAAUUUCCGCGGCAAGACAAU______GGC
.......(((((((((....(...(((.........((.((((.((((.....)))).)))).)).........)))..)..)))))))))................... (-19.60 = -20.02 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:29 2006