Locus 1128

Sequence ID 2L_DroMel_CAF1
Location 3,067,766 – 3,067,868
Length 102
Max. P 0.976606
window1837

overview

Window 7

Location 3,067,766 – 3,067,868
Length 102
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.35
Mean single sequence MFE -37.50
Consensus MFE -29.69
Energy contribution -28.97
Covariance contribution -0.72
Combinations/Pair 1.12
Mean z-score -2.81
Structure conservation index 0.79
SVM decision value 1.77
SVM RNA-class probability 0.976606
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3067766 102 + 22407834
UAACUGCUGUCUUGCAGGG-CUGUAGGCU-UCGGUCCAAAAUUA-AGUCUACAGUCUCUGCGAUUCCGGGCAGUUGAAA-UGAUGCAAGAUGAGAG---GC-UCAGUCCA
(((((((((..((((((((-(((((((((-(.(((.....))))-))))))))))).))))))..)..))))))))...-(((.((..........---))-)))..... ( -36.00)
>DroPse_CAF1 25089 99 + 1
UAACUGCCGUCUUGCAGCGCCUGUGGACGAUAGGUCCAAAAUUUCAGUCUACAGACGCUGCGAUUCCGGGCAGUUGAGU-GGAUG-------GGAU---CCACCUUUAAA
(((((((((..((((((((.((((((((((.............)).)))))))).))))))))..)..)))))))).((-((((.-------..))---))))....... ( -42.72)
>DroEre_CAF1 21064 102 + 1
UAACUGCUGUCUUGCAGGG-CUGUAGGCU-UCGGUCCAAAAUUU-AGUCUACAGUCGCUGCGAUUCCGGGCAGUUGAAA-GGAUGCAAGAUGAGAG---GC-CCAGUCCA
(((((((((..((((((((-(((((((((-..............-))))))))))).))))))..)..))))))))...-((((......(....)---..-...)))). ( -38.04)
>DroYak_CAF1 21166 105 + 1
UAACUGCUGUCUUGCAGGG-CUGUAGGCU-UUGGUCCAAAAUUU-AGUCUACAGUCGCUGCGAUUCCGGGCAGUUGAAA-UGAUGCAAGAUGAAAGAGAGC-CCGGUCCA
...........((((((((-(((((((((-..(........)..-))))))))))).))))))..((((((..((...(-(........))....))..))-)))).... ( -34.80)
>DroAna_CAF1 20498 95 + 1
UAACUGCUGUCUUGCAGAGUCUGUGGACG-U-GGUCCAAAUUU---GUCUACAGCCACUGCGAUUCCGGGCAGUUGAAAGUGAU--AAUACGGACU---CC-C----CAA
(((((((((..((((((.(.(((((((((-.-..........)---)))))))).).))))))..)..))))))))........--.....((...---..-)----).. ( -30.70)
>DroPer_CAF1 25172 99 + 1
UAACUGCCGUCUUGCAGCGCCUGUGGACGAUAGGUCCAAAAUUUCAGUCUACAGACGCUGCGAUUCCGGGCAGUUGAGU-GGAUG-------GGAU---CCACCUUUAAA
(((((((((..((((((((.((((((((((.............)).)))))))).))))))))..)..)))))))).((-((((.-------..))---))))....... ( -42.72)
>consensus
UAACUGCUGUCUUGCAGGG_CUGUAGACG_UAGGUCCAAAAUUU_AGUCUACAGUCGCUGCGAUUCCGGGCAGUUGAAA_GGAUG_AAGAUGAGAG___CC_CCAGUCAA
(((((((((..((((((.(.((((((((..................)))))))).).))))))..)..)))))))).................................. (-29.69 = -28.97 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:24 2006