Locus 1124

Sequence ID 2L_DroMel_CAF1
Location 3,046,598 – 3,046,694
Length 96
Max. P 0.598241
window1830

overview

Window 0

Location 3,046,598 – 3,046,694
Length 96
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 89.80
Mean single sequence MFE -32.33
Consensus MFE -25.99
Energy contribution -26.77
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.80
SVM decision value 0.13
SVM RNA-class probability 0.598241
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3046598 96 - 22407834
UGAAGGAAAACGAGGGCGCUCUGAAAGAUGAUCGCGAAAGCGAACCAAGAGGGGUGGAUGUUUGCUAUGAGUCAGCCACUUG--CGCCGCUCGAACGG
..........(((((((((............((((....))))........((((((.(((((.....))).)).)))))))--)))).))))..... ( -33.00)
>DroSec_CAF1 6235 98 - 1
UGAAGGAAAACGAGGGCGCUCGAAAUUAUUAUCGCGAAAGCGGACUAAGAGGGGUGGAUGUGUGCUAUGAGUCAGCCAGUUGAGCGCCUCUAGAGCGG
................(((((..........((((....))))....(((((.((.(((.((.(((.......))))))))..)).))))).))))). ( -29.90)
>DroSim_CAF1 6470 98 - 1
UGAAGGAAAACGAGGGCGCUCGAAAAUAUGAUCGCGAAAGCGAACUAAGAGGGGUGGAUGUGUGCUAUGAGUCACCCACUUGAGCGCCUCUAGAGCGG
...........((((.(((((..........((((....)))).....(((((((((..(((...)))...)))))).))))))))))))........ ( -34.10)
>consensus
UGAAGGAAAACGAGGGCGCUCGAAAAUAUGAUCGCGAAAGCGAACUAAGAGGGGUGGAUGUGUGCUAUGAGUCAGCCACUUGAGCGCCUCUAGAGCGG
..........(.(((((((((..........((((....))))........((((((.((...((.....)))).))))))))))))).)).)..... (-25.99 = -26.77 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:18 2006