| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,014,055 – 3,014,175 |
| Length | 120 |
| Max. P | 0.710746 |
| Location | 3,014,055 – 3,014,175 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.39 |
| Mean single sequence MFE | -45.44 |
| Consensus MFE | -42.79 |
| Energy contribution | -43.57 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3014055 120 - 22407834 GAGUCGGGAAUGUAGAUGCUAGAUAGCUGGGGGAUAUCCGGCGGAUACUUGAGUGGCAAGUGCGGCUUUAGGAUCCCGGUGGCCGGCUGCGGCGGUGGCUGGUAUCUCGGCGGGAUGGAG ..(((((((........(((.....((((((.....))))))((((.((.((((.((....)).)))).)).)))).))).((((((..(....)..)))))).)))))))......... ( -47.50) >DroSec_CAF1 21492 120 - 1 GAGUCGGGAAUGUAGAUGCUAGAUAGCUGGGGGAUAUCCGGCGGAUACUUGAGUGGCAAGUGCGGCUUGAGGAUCCCGGUGGCCGGCUGGGGCGGUGGCUGGUAUCUCGGCGGGAUGGAG ..(((((((................((((((.....))))))((((.((..(((.((....)).)))..)).))))((((.((((.(...).)))).))))...)))))))......... ( -48.40) >DroEre_CAF1 22142 120 - 1 GAGUCGGGAAUGUAGAUGCUAGAUAGCUGGGGGAUAUCCGGCGGAUAUUUGAGUGGCAAGUGGGGCUUGAGGAUCCCUGUGGCCGGCUGAGGCGGUGGCUGGUAUCUCGGCGGUAUGGAG ..((((.......(((((((((...((((((.....))))))((((.((..(((..(....)..)))..)).))))(..(.(((......))).)..))))))))))))))......... ( -40.41) >consensus GAGUCGGGAAUGUAGAUGCUAGAUAGCUGGGGGAUAUCCGGCGGAUACUUGAGUGGCAAGUGCGGCUUGAGGAUCCCGGUGGCCGGCUGAGGCGGUGGCUGGUAUCUCGGCGGGAUGGAG ..(((((((................((((((.....))))))((((.(((((((.((....)).))))))).))))((((.((((.(...).)))).))))...)))))))......... (-42.79 = -43.57 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:08 2006