| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,011,508 – 3,011,628 |
| Length | 120 |
| Max. P | 0.999902 |
| Location | 3,011,508 – 3,011,628 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.07 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -16.31 |
| Energy contribution | -16.31 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.70 |
| SVM decision value | 4.46 |
| SVM RNA-class probability | 0.999902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3011508 120 - 22407834 GAACGGACUUGAAGGAACCAUCAAAAGAAUACUUAUACCCUUCGUAAAGGGUAAACAAUACAAUGCAGCAACUCUUCUCUCUCUCUCUAAAAAAAAAAAACAAAAAACCGAAGGGAAGAA ........((((.(....).))))...........(((((((....)))))))...................((((((((.((..........................)))))))))). ( -17.57) >DroSec_CAF1 18912 109 - 1 GUACGAACUUGAAGGAACCAUCGAAAGAAUACUUAUACCCUUCGUAAAGGGUAAACAAUACAAUGCAGCAACUCUUCUCUCU-----UAACAAAA------AAAAAACAGAAGGGAAGAA (((.....(((.........((....)).......(((((((....)))))))..))).....)))......((((((((((-----........------.......)).)))))))). ( -19.96) >DroEre_CAF1 19546 99 - 1 CUUC-UUCUUGCAGAAAGCAUCGCAAGAAUGCUAGUACCCUUCAGAAAGGGUAUACAAAACAAUGCAGUAACUCUUCUCUC--------------------AAAAAAGUGGAGGGAAGAA ....-...(((((...((((((....).))))).((((((((....)))))))).........)))))....(((((((((--------------------.........))))))))). ( -32.70) >consensus GUACGAACUUGAAGGAACCAUCGAAAGAAUACUUAUACCCUUCGUAAAGGGUAAACAAUACAAUGCAGCAACUCUUCUCUCU_____UAA_AAAA______AAAAAACAGAAGGGAAGAA ........(((.........((....)).......(((((((....)))))))..)))..............((((((((...............................)))))))). (-16.31 = -16.31 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:02 2006