Locus 1110

Sequence ID 2L_DroMel_CAF1
Location 3,010,014 – 3,010,134
Length 120
Max. P 0.687971
window1807

overview

Window 7

Location 3,010,014 – 3,010,134
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.72
Mean single sequence MFE -36.37
Consensus MFE -28.72
Energy contribution -28.51
Covariance contribution -0.21
Combinations/Pair 1.12
Mean z-score -2.29
Structure conservation index 0.79
SVM decision value 0.32
SVM RNA-class probability 0.687971
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3010014 120 - 22407834
CCCACCACUUUGUGGGUGGCUUCCCCCGGCUGGGAGACUGGGAACCCGCAACCUCCAGCUCCCGACAAUGGACAAUAAAACCGGAGUGCCACACAAAAAGCAUAAUAAGUUUUUAAUGGG
((((((((...))))(((((((((....(.((((((.(((((...........))))))))))).)...((.........)))))).)))))...((((((.......))))))..)))) ( -38.70)
>DroSec_CAF1 17460 112 - 1
CCCACCACUUUGUGGGUGGCUUCCCCCG--------ACUGGGAACCCGCAACCUCCAGCUCCCCACAAUGGACAAUAAAACCAGAGUGGCACACAAAAAGCAUAAUAAGCUUUUAAUGGG
((((((((((((((((.((.(((((...--------...))))).))((........))..)))))).(((.........)))))))))......((((((.......))))))..)))) ( -36.40)
>DroEre_CAF1 18067 119 - 1
CCCACCACUUUGUGGGUGGCUUCUUC-AACUGGGAGACUGGGAACGCGCAACCUCCAGCUCUCGACAAUGGACAAUAAAACCAGAGUGGCACACAAAAAGCAUAAUAAGCUUUUAAUGGG
((((((((((((.(..(....(((..-...((((((.(((((...........))))))))))).....))).....)..)))))))))......((((((.......))))))..)))) ( -34.00)
>consensus
CCCACCACUUUGUGGGUGGCUUCCCCCG_CUGGGAGACUGGGAACCCGCAACCUCCAGCUCCCGACAAUGGACAAUAAAACCAGAGUGGCACACAAAAAGCAUAAUAAGCUUUUAAUGGG
((((((((((((.(.((((.(((((..............))))).))))....((((...........))))........)))))))))......((((((.......))))))..)))) (-28.72 = -28.51 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:56 2006