Locus 1107

Sequence ID 2L_DroMel_CAF1
Location 3,008,410 – 3,008,530
Length 120
Max. P 0.871466
window1803

overview

Window 3

Location 3,008,410 – 3,008,530
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 91.57
Mean single sequence MFE -37.00
Consensus MFE -31.99
Energy contribution -33.10
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -2.45
Structure conservation index 0.86
SVM decision value 0.87
SVM RNA-class probability 0.871466
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3008410 120 + 22407834
CCAAAGGCAAAGUCAUCUGUAUGACUUAAUGUCGACGCCGACAGCGACGCUUGUCGUUUGUCAUUCAAUCCGAGCAGCGAAGGCGUUUGAUAUAUACUCGUAUGUAUGUAAGUGUAUGUU
.....(((((((((((....)))))))..))))(((((((((((((((....)))).)))))........((.....))..)))))).((((((((((..((....))..)))))))))) ( -37.50)
>DroSec_CAF1 15883 116 + 1
CCAAAGGCAAAGUCAUCUGUAUGACUUAAUGUCGACGCCGACAGCGACGCUUGUCGUUUGUCAUUCGAUCCGAGCAACGAAGGCGUUUGAUAUAUACUCGUAU----GUAAGUGUAUGUU
.....(((((((((((....)))))))..))))(((((((((((((((....)))).))))).((((..........)))))))))).((((((((((.....----...)))))))))) ( -37.70)
>DroEre_CAF1 16438 110 + 1
CUAAAGGCAUAGUCAUCUGUAUGACUUAAUGUCGACGCCGACAGCGACGCUUGUCGUUUGUCAUUCGAUCCGAGCAGCGAAGGCGUUUGAUAUAU------AU----GUAAGUGUAUAUU
.....(((((((((((....))))))..)))))(((((((((((((((....)))).))))).((((..........)))))))))).(((((((------((----....))))))))) ( -35.80)
>consensus
CCAAAGGCAAAGUCAUCUGUAUGACUUAAUGUCGACGCCGACAGCGACGCUUGUCGUUUGUCAUUCGAUCCGAGCAGCGAAGGCGUUUGAUAUAUACUCGUAU____GUAAGUGUAUGUU
.....(((((((((((....)))))))..))))(((((((((((((((....)))).))))).(((.....))).......)))))).((((((((((............)))))))))) (-31.99 = -33.10 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:53 2006