| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,006,597 – 3,006,706 |
| Length | 109 |
| Max. P | 0.954785 |
| Location | 3,006,597 – 3,006,706 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.71 |
| Mean single sequence MFE | -18.86 |
| Consensus MFE | -12.27 |
| Energy contribution | -12.60 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.954785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3006597 109 - 22407834 CUCGCCAAAAGCGAGAACAUAAAAACCCAAAAUCAAAAAAUCAAGCCGGACUUACUAGAGUCCCCCCCCCUCCCCGCUCUUUACCAUAGUCUACAGACAUUUU-----------UUGUUG (((((.....)))))..................((((((((......((((((....)))))).........................(((....))))))))-----------)))... ( -20.40) >DroSec_CAF1 14106 109 - 1 CUCGCCAAAAGCGAGAACAUAAAAACACAAG--------AUCAAGCCGGACUUAGUAGAGUCCCC---CCUCCCCCCUCUUUACCCUAAUCUAUAGACAUUUUUUGUUCAUUUUUUGUUG (((((.....)))))((((.((((..(((((--------(.......((((((....))))))..---.................(((.....))).....))))))...)))).)))). ( -19.70) >DroYak_CAF1 13798 108 - 1 CUUGCCAAAAGCUAGAACACAAAAACCCAAG--------AUCAAGCCGGACUUGGUAGAGUCCCCCCCA--UACCCCUCUUUACCAUAGUCUAUACAUAUUUU-UU-CUAUUUUCUGUUG ((.((.....)).))((((.((((....(((--------((......(((((((((((((.........--.......)))))))).)))))......)))))-..-...)))).)))). ( -16.49) >consensus CUCGCCAAAAGCGAGAACAUAAAAACCCAAG________AUCAAGCCGGACUUAGUAGAGUCCCCCCCCCUCCCCCCUCUUUACCAUAGUCUAUAGACAUUUU_U____AUUUUUUGUUG (((((.....)))))................................((((((....))))))......................................................... (-12.27 = -12.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:46 2006