Locus 1103

Sequence ID 2L_DroMel_CAF1
Location 3,006,279 – 3,006,397
Length 118
Max. P 0.687627
window1795

overview

Window 5

Location 3,006,279 – 3,006,397
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.28
Mean single sequence MFE -25.58
Consensus MFE -20.31
Energy contribution -21.00
Covariance contribution 0.69
Combinations/Pair 1.07
Mean z-score -1.73
Structure conservation index 0.79
SVM decision value 0.32
SVM RNA-class probability 0.687627
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3006279 118 - 22407834
AUUCUUUUGUUGUCUCUGGCAUUUCAUUAGUUUUCGGGCUGCUGAAAUUCUUUUCGAACUCCUCUGGCCAGCUACUUUCGAUUUU--UUGUCUUGUAUGGCUUUAUUUAGAGAACACAAA
.....(((((..((((((((.(((((.(((((....))))).)))))(((.....)))........)))(((((..(..(((...--..)))..)..)))))......)))))..))))) ( -24.00)
>DroSec_CAF1 13791 118 - 1
AUUCUUUUGUUGUCUCUGGCAUUUCAUUAGUUUUCGGGCUGCUGAAAUUCUUUUCGAACUCCCCUGGCCAGAUACUUUCGAUUUU--UUGCCUUCUAUGGCUUUAUUUAGAGAACACAAA
.......((((.((((((((.(((((.(((((....))))).)))))(((.....)))........)))))).............--..(((......)))........)).)))).... ( -25.60)
>DroEre_CAF1 14336 115 - 1
AUUCUUUUGUUGUCUCUGGCAUUUCAUUAGUUUUGGGGCUGCUGAAAUUCUUUUCAAAAUCC---GGCCAGCUACUUUCGAUUUU--UUGUCUUGAAUGGCUUUAUUUAGAGAACACAAA
.....(((((..(((((((.................(((((.(((((....))))).....)---))))(((((.((..(((...--..)))..)).)))))....)))))))..))))) ( -24.30)
>DroYak_CAF1 13487 117 - 1
AUUCUUUUGUUGUCGCUGGCAUUUCAUUAGUUUUGGGGCUGCUGAAAUUCUUCUCGAAGUCC---AGCCAGCUACUUUCGAUUUUUUUUUUCUGGAAUGGCUUUAUUUAGAGAACAAAAA
....(((((((.((((((((....((.......))(((((..(((........))).)))))---.))))))......(.(((((........))))).).........)).))))))). ( -28.40)
>consensus
AUUCUUUUGUUGUCUCUGGCAUUUCAUUAGUUUUCGGGCUGCUGAAAUUCUUUUCGAACUCC___GGCCAGCUACUUUCGAUUUU__UUGUCUUGAAUGGCUUUAUUUAGAGAACACAAA
.......((((.((((((((.(((((.(((((....))))).)))))(((.....)))........)))))).................(((......)))........)).)))).... (-20.31 = -21.00 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:45 2006