| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 43,534 – 43,625 |
| Length | 91 |
| Max. P | 0.788393 |
| Location | 43,534 – 43,625 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 90.58 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -19.27 |
| Energy contribution | -20.15 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 43534 91 + 22407834 GCCAACAACAAUCCAUACUGGAGACGGAACGGAGACU--UCAAAAUAAGUUUCCGAGCAGUGACUGUAUCGAAUCUAUGUAGAGCACGGAUUG ........((((((...(((....)))..((((((((--(......)))))))))....(((.((.(((.........))).))))))))))) ( -28.20) >DroSec_CAF1 21113 91 + 1 UCCAACAACAAUCCAUACUGGAGACGGAGCGGAGACU--ACAAAAUAAGUUUCCGAGCAGUGACUGUAUCGAAUCUAUGUAGAGAACGGAUUG ........((((((.(((((((..(((..((((((((--........)))))))).((((...)))).)))..)))).)))......)))))) ( -24.30) >DroSim_CAF1 23287 91 + 1 ACCAACAACAAUCCAUACUGGAGACGGAGCGCAGACU--ACAAAAUAAGUUUCCGAGCAGUGACUGUAUCGAAUCUAUGUAGAGAACGGAUUG ........((((((...(((....)))........((--(((.....((.(((.((((((...)))).))))).)).))))).....)))))) ( -19.70) >DroYak_CAF1 20431 92 + 1 ACCAACCACAAUCCAUACUGGAGACGGAACGGAUACUUUACAAAAUAAGUGGCCGGGCAGUGACUAUAUCAA-UCUAUGUAGAGCACGGACUG .((..((..........(((....)))..(((.(((((........))))).)))))..(((.((((((...-...))))))..))))).... ( -22.40) >consensus ACCAACAACAAUCCAUACUGGAGACGGAACGGAGACU__ACAAAAUAAGUUUCCGAGCAGUGACUGUAUCGAAUCUAUGUAGAGAACGGAUUG ........((((((...(((....)))..((((((((..........))))))))....(((.((.(((.........))).))))))))))) (-19.27 = -20.15 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:12 2006