Locus 1097

Sequence ID 2L_DroMel_CAF1
Location 3,003,417 – 3,003,536
Length 119
Max. P 0.690131
window1783

overview

Window 3

Location 3,003,417 – 3,003,536
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.15
Mean single sequence MFE -23.29
Consensus MFE -16.42
Energy contribution -17.02
Covariance contribution 0.60
Combinations/Pair 1.14
Mean z-score -1.96
Structure conservation index 0.71
SVM decision value 0.33
SVM RNA-class probability 0.690131
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3003417 119 - 22407834
AGUGUAUGCCACAUUCGUCAUCUGUGGUUUGCAUUUAUUUACCAAUAUGUUUGUUGUCACUGCUUUCUGUUGAGCAAACAAGUUU-UUUGGUAUUUUUUUUUAUUAUUAUUGUUCAUCUC
((((((.((((((.........)))))).))))))....((((((.(..((((((.....(((((......)))))))))))..)-.))))))........................... ( -25.10)
>DroSec_CAF1 10989 114 - 1
AGUGUAUGCCACAUUCGUCAUCUGUGGUUUGCAUUUGUUUACCAAUAUGUUUGUUGUCACUGCUUUCUGUUGAGCAAACAAGUUU-UUUGGUAUUUUU--UUU---UUAUUGUCCAUCUC
((((((.((((((.........)))))).))))))....((((((.(..((((((.....(((((......)))))))))))..)-.)))))).....--...---.............. ( -25.10)
>DroSim_CAF1 10346 116 - 1
AGUGUAUGCCACAUUCGUCAUCUGUGGUUUGCAUUUGUUUACCAAUAUGUUUGUUGUCACUGCUUUCUGUUGAGCAAACAAGUUU-UUUGGUAUUUUUUUUUU---UUAUUGUCCAUCUC
((((((.((((((.........)))))).))))))....((((((.(..((((((.....(((((......)))))))))))..)-.))))))..........---.............. ( -25.10)
>DroEre_CAF1 10996 111 - 1
AGUGUACGCCAUAUUCGGCGUCAGUGGGUUGCAUUUAUUUACCAAUAUGUUUAUUGUCGUUACUUUCUGUUGAACAAACAAGUUU-UUUGGUAUUUUC--------UUAUUGUCCAUCUC
..((.(((((......)))))))(((((...........((((((..(((((....(((..((.....)))))..))))).....-.)))))).....--------......)))))... ( -18.95)
>DroYak_CAF1 10571 108 - 1
AGUGUAUGCCAUAUUCGUCAUCGGUG----GCAUAUAUUUACCAAUAUGUACGUUGUCAUUGCUUUCUGUUGAACAAACAAGUUUUUUUGGUAGUUUU--------UUAUGGUCCAUCUC
.(((((((((((...((....)))))----))))))))(((((((.....((.((((((..((.....)))).))))....))....)))))))....--------.............. ( -22.20)
>consensus
AGUGUAUGCCACAUUCGUCAUCUGUGGUUUGCAUUUAUUUACCAAUAUGUUUGUUGUCACUGCUUUCUGUUGAGCAAACAAGUUU_UUUGGUAUUUUU__UU____UUAUUGUCCAUCUC
.(((((.(((((...........))))).))))).....((((((..(((((((..(((..((.....)))))))))))).......))))))........................... (-16.42 = -17.02 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:33 2006