Locus 1083

Sequence ID 2L_DroMel_CAF1
Location 2,992,593 – 2,992,689
Length 96
Max. P 0.921042
window1754

overview

Window 4

Location 2,992,593 – 2,992,689
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 77.53
Mean single sequence MFE -22.75
Consensus MFE -17.53
Energy contribution -17.73
Covariance contribution 0.20
Combinations/Pair 1.35
Mean z-score -1.57
Structure conservation index 0.77
SVM decision value 1.14
SVM RNA-class probability 0.921042
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2992593 96 - 22407834
AUUUAUUUAAUUCCAUUU---CCCUAAUCAUUUAUUCCUAAAGCGGCGCAGUCUGGCUCCCAGCCAACGUGGACCACUGCGUCCCGAGUCCCGUCACUC
..................---.....................((((.((....((((.....)))).((.((((......)))))).)).))))..... ( -19.00)
>DroSec_CAF1 4380 95 - 1
AUUUAUUUAAUUCCAUUC---CCUUAACCAUUU-UUCCUAAAGCGGCGCAGUCUGGCUCCUAGCCAACGUGGACCACUGCGUCCCGAGUCGCGCCACUC
..................---............-.......((.(((((....((((.....)))).((.((((......))))))....))))).)). ( -24.50)
>DroSim_CAF1 4342 96 - 1
AUUUAUUUCAUUUCAUUC---CCUUAACCAUUUUUUCCUAAAGCGGCGCAGUCUGGCUCCUAGCCAACGUGGACCACUGCGUCCCGAGUCGCGCCACUC
..................---....................((.(((((....((((.....)))).((.((((......))))))....))))).)). ( -24.50)
>DroEre_CAF1 4326 95 - 1
AUUU-UUUAUUACCACUU---GUUUAAUCAUUUUUUCCAAAAGCGGCGCAGCUUGGCUCCCAGCCAACGUGGACCACUGCGUCCCGAGUCGCGUCACUC
....-.............---....................((.(((((.(((((((.....)))).((.((((......))))))))).))))).)). ( -23.40)
>DroYak_CAF1 4339 96 - 1
AUUUAAUUAUUUUCAAUG---UUUUAACCAUUUUUCCCCAAAGCGGCGCAGUCUGGCUCCCAGCCAACGUGGGCCAAUGCGUCCCGAGUCGCGCCACUC
..................---....................((.(((((....((((.....)))).((.((((......))))))....))))).)). ( -23.90)
>DroPer_CAF1 4150 99 - 1
AGUUAAUUAAUUAAAUCCCUUUUUGACUCGUUUUCAAUUGCAGCGUCGCAGCCUGGCUCCCAGCCAACGAGGGGGACAAAGACUUUCGUCUCGAAAUGA
...............(((((......((((((.....((((......))))...(((.....))))))))))))))...((((....))))........ ( -21.20)
>consensus
AUUUAUUUAAUUCCAUUC___CCUUAACCAUUUUUUCCUAAAGCGGCGCAGUCUGGCUCCCAGCCAACGUGGACCACUGCGUCCCGAGUCGCGCCACUC
.........................................((.(((((....((((.....)))).((.((((......))))))....))))).)). (-17.53 = -17.73 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:05 2006