| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,980,082 – 2,980,178 |
| Length | 96 |
| Max. P | 0.589453 |
| Location | 2,980,082 – 2,980,178 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 73.12 |
| Mean single sequence MFE | -32.03 |
| Consensus MFE | -17.40 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2980082 96 - 22407834 UGAGGAGUCAGCUCUGGGGGCCGACUGU-CGAUUGUACAUAAAAC--ACUUAGACUUAAGCCCGGCUGGCGGGCCAUCGUGUCCUGGCCAGCCACUCGA--- .((((((....)))...((((.....((-(...(((.......))--)....)))....))))(((((((((((......))))..))))))).)))..--- ( -35.50) >DroSec_CAF1 10041 89 - 1 G-----GUCGGCUCUGGGGGCCGACUGU-CGAUUGUACAUAAAAC--ACUUAGACUUAAGCACGGCUGGCGGGCCAUCG--UCCUGGCCAGCCACUCGA--- (-----(((((((.....))))))))((-(...(((.......))--)....)))........(((((((((((....)--)))..)))))))......--- ( -36.00) >DroSim_CAF1 10001 89 - 1 G-----GUCGGCUCUGGGGGCCGACUGU-CGAUUGUACAUAAAAC--ACUUAGACUUAAGCGCGGCUGGCGGGCCAUCG--UCCUGGCCAGCCACUCGA--- (-----(((((((.....))))))))((-(...(((.......))--)....)))....(.(.(((((((((((....)--)))..))))))).).)..--- ( -36.30) >DroEre_CAF1 10159 89 - 1 A-----GUCGGCUCUGGAGCCCGACUGU-CUAUUGUACAUAGAAC--ACCUAGACUUAAGCGCGGCUGGCGGGGCAUCG--UCCUGGCCAGCCACUCGA--- (-----(((((((....)).))))))((-(((.(((.......))--)..)))))....(.(.(((((((.(((.....--.))).))))))).).)..--- ( -35.70) >DroYak_CAF1 10180 81 - 1 -------------CUGGAGCCCGACUGU-CUAUUGUACAUAGAAC--ACCUAGACUUAAGCGCGGCUGGCAAGGCAUCG--UCCUGGCCAGCCACUCGA--- -------------.....((.(....((-(((.(((.......))--)..)))))....).))(((((((.(((.....--.))).)))))))......--- ( -26.50) >DroMoj_CAF1 10454 88 - 1 -----AGCG------AAUGC-CGUCAAUACAAUUGUAUAUACAUUUAGGUUAGUUUUAAGCUUGGCUGUGGUGUCUGUG--UCGGGCGCGGCUAAUUGUUAA -----((((------(..((-(....((((....)))).((((.(((((((.......))))))).))))(((((((..--.))))))))))...))))).. ( -22.20) >consensus ______GUCGGCUCUGGGGCCCGACUGU_CGAUUGUACAUAAAAC__ACUUAGACUUAAGCGCGGCUGGCGGGCCAUCG__UCCUGGCCAGCCACUCGA___ ............((((((.......(((.(....).))).........)))))).........(((((((.((..........)).)))))))......... (-17.40 = -16.57 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:00 2006