Locus 108

Sequence ID 2L_DroMel_CAF1
Location 370,365 – 370,485
Length 120
Max. P 0.991994
window157

overview

Window 7

Location 370,365 – 370,485
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.50
Mean single sequence MFE -39.36
Consensus MFE -36.98
Energy contribution -37.02
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.76
Structure conservation index 0.94
SVM decision value 2.30
SVM RNA-class probability 0.991994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 370365 120 - 22407834
CAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACACCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGAAGUGUACAUAU
..((((((((....(((((......((.((((((((..(((.......)))..)))))))).)).........(((.........)))..)))))..))))))))............... ( -40.10)
>DroSec_CAF1 37935 120 - 1
CAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACACCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGAAGUGUACACAU
..((((((((....(((((......((.((((((((..(((.......)))..)))))))).)).........(((.........)))..)))))..))))))))............... ( -40.10)
>DroSim_CAF1 38587 120 - 1
CAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACACCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGGAGUGUACACAU
..((((((((....(((((......((.((((((((..(((.......)))..)))))))).)).........(((.........)))..)))))..))))))))............... ( -40.10)
>DroEre_CAF1 44454 120 - 1
AAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACAUCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUAAUAGCAUUACAAACGGGGUUCACUGGGUCACGAAGCGUACAUAU
..((((((((....(((((......((.((((((((.((((.......)))).)))))))).))...............(.....)....)))))..))))))))............... ( -39.50)
>DroYak_CAF1 39036 120 - 1
AAGAUGCAGUUCCUAUUCCUCUCCAGCGGCUGCCACAUCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGAGGUGUACACUU
..(((.((((....(((((......((.((((((((.((((.......)))).)))))))).)).........(((.........)))..)))))..)))).)))...((((....)))) ( -37.00)
>consensus
CAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACACCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGAAGUGUACACAU
..((((((((....(((((......((.((((((((..(((.......)))..)))))))).))..........((((...)))).....)))))..))))))))............... (-36.98 = -37.02 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:55 2006