| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,963,366 – 2,963,475 |
| Length | 109 |
| Max. P | 0.730127 |
| Location | 2,963,366 – 2,963,475 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.47 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -25.78 |
| Energy contribution | -26.42 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2963366 109 + 22407834 ACAAGAACAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCGGCAGCUCUGGCGGCCAAUGGUCUAGUCCUCCAUAAUCAUCACCA----------- ......................((((((((..(((((((((((((((..((((.....))))..))))))...))))))))))))).))))..................----------- ( -31.10) >DroVir_CAF1 22028 106 + 1 ACAAAAAUAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCAGCGGCGCUGGCUGCCAAUAGUUUGGUGCUCA---AUCACAAUCA----------- .........(((..................(((..((.(((((((((...(((.....))))))))))))))..)))(((((....))))))))..---..........----------- ( -33.30) >DroPse_CAF1 122785 120 + 1 ACAAGAACAAGCAAACGUAAUUACUAUCCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCGGCGGCCUUGGCGGCCAAUGGUCUGGUGCUCCACAACCAUCGUCAGAACAAUCAGA ...............................((((((((((((((((.((....))..)))))))))))))((((((....(((((.(((....)))..))))))))))))))....... ( -34.90) >DroWil_CAF1 25392 107 + 1 AUAAAAAUAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCAGCGGCGGCGGCUUUGGCGGCCAAUGGUUUGGUGAUGCAUCAACAACA--A----------- ................(((.((((((((((..((((((((((..(((..((((........))))..)))..))))))))))))).))))))))))..........--.----------- ( -34.10) >DroMoj_CAF1 22600 106 + 1 ACAAAAAUAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCAGCGGCGCUAGCUGCCAAUCGUUUGGUGCUUA---AUCAAAGCCA----------- .......(((((..................(((((((.(((((((((...(((.....)))))))))))))))))))(((((....))))))))))---..........----------- ( -36.40) >DroPer_CAF1 124487 115 + 1 ACAAGAACAAGCAAACGUAAUUACUAUCCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCGGCGGCCUUGGCGGCCAAUGGUCUGGUGCUCCACAACCAUCGUCAGAACAA----- ...............................((((((((((((((((.((....))..)))))))))))))((((((....(((((.(((....)))..))))))))))))))..----- ( -34.90) >consensus ACAAAAACAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCGGCGGCCCUGGCGGCCAAUGGUCUGGUGCUCCA_AAUCAUCAUCA___________ ..........................((((.(((((((((((..(((..((((........))))..)))..)))))))))))....))))............................. (-25.78 = -26.42 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:44 2006