| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,956,931 – 2,957,039 |
| Length | 108 |
| Max. P | 0.611351 |
| Location | 2,956,931 – 2,957,039 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 92.62 |
| Mean single sequence MFE | -21.07 |
| Consensus MFE | -19.62 |
| Energy contribution | -19.95 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2956931 108 + 22407834 CAGCAAGUUGUGUUUUUUGAUUCUCGUCGUAUUGUCGUCGUUUCUGAAUUGUUGUAUAUCGGUAUCAAAAUACACACAUCUUGCAUACUCACGCAACUACGCCCAC----AU-- ..(((((.(((((.(((((((.(.((..((((.....(((....)))......))))..))).))))))).)))))...)))))........((......))....----..-- ( -23.30) >DroPse_CAF1 114727 114 + 1 CAGCAAGUUGUGUUUUUUGAUUCUCGUCGUAUUGUCGUCGUUUAUAAAUUGUUGUAUAUCGGUAUCAAAAUACACACAUCUAGCAUACUCACACAACCAGCCACACACAAAUUU ..((.((.(((((.(((((((.((((.((......)).))..(((((....)))))....)).))))))).)))))...)).)).............................. ( -17.20) >DroSim_CAF1 10199 108 + 1 CAGCAAGUUGUGUUUUUUGAUUCUCGUCGUAUUGUCGUCGUUUCUGAAUUGUUGUAUAUCGGUAUCAAAAUACACACAUCUUGCAUACUCACGCAACUACGCCCAC----AU-- ..(((((.(((((.(((((((.(.((..((((.....(((....)))......))))..))).))))))).)))))...)))))........((......))....----..-- ( -23.30) >DroEre_CAF1 9430 112 + 1 CAGCAAGUUGUGUUUUUUGAUUCUCGUCGUAUUGUCGUCGUUUCUGAAUUGUUGUAUAUCGGUAUCAAAAUACACACAUCUUGCAUACUCACGCAACUACGCCCACAAACAU-- ..(((((.(((((.(((((((.(.((..((((.....(((....)))......))))..))).))))))).)))))...)))))........((......))..........-- ( -23.30) >DroYak_CAF1 9630 112 + 1 CAGCAAGUUGUGUUUUUUGAUUCUCGUCGUAUUGUCGCCGUUUCUGAAUUGUUGUAUAUCGGUAUCAAAAUACACACAUCUUGCAUACUCACGCAACUACGCCCACAAACAU-- ..(((((.(((((.(((((((.(.((..((((....((.(((....))).)).))))..))).))))))).)))))...)))))........((......))..........-- ( -22.10) >DroPer_CAF1 115234 114 + 1 CAGCAAGUUGUGUUUUUUGAUUCUCGUCGUAUUGUCGUCGUUUAUAAAUUGUUGUAUAUCGGUAUCAAAAUACACACAUCUAGCAUACUCACACAACCAGCCACACACAAAUUU ..((.((.(((((.(((((((.((((.((......)).))..(((((....)))))....)).))))))).)))))...)).)).............................. ( -17.20) >consensus CAGCAAGUUGUGUUUUUUGAUUCUCGUCGUAUUGUCGUCGUUUCUGAAUUGUUGUAUAUCGGUAUCAAAAUACACACAUCUUGCAUACUCACGCAACUACGCCCACA_A_AU__ ..(((((.(((((.(((((((.(.((..((((...((............))..))))..))).))))))).)))))...))))).............................. (-19.62 = -19.95 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:41 2006