Locus 107

Sequence ID 2L_DroMel_CAF1
Location 368,811 – 368,916
Length 105
Max. P 0.840802
window156

overview

Window 6

Location 368,811 – 368,916
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.08
Mean single sequence MFE -29.24
Consensus MFE -14.12
Energy contribution -14.48
Covariance contribution 0.36
Combinations/Pair 1.24
Mean z-score -2.00
Structure conservation index 0.48
SVM decision value 0.75
SVM RNA-class probability 0.840802
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 368811 105 + 22407834
AAUAAAUAACUUCAAACUCCACACCAACACUAACAAGAGGCAACUCUCU---UCG--AAAUGGAGCUCUUCGAUUGGUUGACUUCGUCGAAG--GGGCGUUGCCCAACGA--------AA
....................................(.(((((((((((---(((--(...((((.((...........)))))).))))))--))).))))))).....--------.. ( -25.70)
>DroSec_CAF1 36365 105 + 1
AAUGAACAACCUCAAACUCCACACCAACACCAACAAGAGGCAACUCUCU---UCG--AAAUGGAGCUCUUCGAUUGGUUGGCUUCGUCGAAG--GGGCGUUGCCCAUCGA--------AA
..(((......)))......................(.(((((((((((---(((--(...((((((..((....))..)))))).))))))--))).))))))).....--------.. ( -30.80)
>DroEre_CAF1 42927 104 + 1
AAUGAACAACUUCCCACUCCACACCAACACCGAGAAGAGGCAACUCUC----UCG--AAAUGGAGCCCUCCGAUUGGCUGACUCCGUCGAAG--GGGCGUUGCCCAUCGG--------AA
................(((((.........(((((.(((....)))))----)))--...)))))...((((((.(((...((((......)--)))....))).)))))--------). ( -35.10)
>DroYak_CAF1 37504 109 + 1
AAUGAACAACUUCCCACUCCACACCAAC------AAGAGGUAACUCUCUCC-UCG--AAAUGGAGCUCUCCGAUUGGCCGACUCCGUCGAAG--GGGCGUUGCCCAUCGAAAGAGCGAAA
..........(((..........(((..------..((((.........))-)).--...))).(((((.((((.(((((.((((......)--)))))..))).))))..)))))))). ( -31.40)
>DroAna_CAF1 48032 100 + 1
AAUGAACAACUUC-----CCACACCAGCCC-------AGUCAACUCUCUUUUUUGAAGAACGAAGCUCUGCCAUUGGCAGAUUUCCACCAAGAAGGGAGUGGCCUAUCGA--------AA
.............-----............-------.((((.(((.((((((((......((((.((((((...))))))))))...))))))))))))))).......--------.. ( -23.20)
>consensus
AAUGAACAACUUCAAACUCCACACCAACAC__A_AAGAGGCAACUCUCU___UCG__AAAUGGAGCUCUCCGAUUGGCUGACUUCGUCGAAG__GGGCGUUGCCCAUCGA________AA
......................................((((((.(((....(((....((((((.((..(.....)..)))))))))))....))).))))))................ (-14.12 = -14.48 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:54 2006