Locus 1069

Sequence ID	2L_DroMel_CAF1
Location	2,955,806 – 2,955,899
Length	93
Max. P	0.992730

overview

Window 7

Location	2,955,806 – 2,955,899
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	95.16
Mean single sequence MFE	-29.22
Consensus MFE	-27.22
Energy contribution	-27.26
Covariance contribution	0.04
Combinations/Pair	1.13
Mean z-score	-1.74
Structure conservation index	0.93
SVM decision value	2.35
SVM RNA-class probability	0.992730
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2955806 93 + 22407834
AUAUAAAUAAGGAGAGCGAGGUAUUGUUGCAUACUUGUAGGCAGCGGGAUGGGGGUGGAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG
...............(((((...(((((((.((....)).))))))).....(((((((((......))))))))).)))))........... ( -31.70)
>DroSec_CAF1 17034 93 + 1
AUAUAAAUAAGGAGAGCGAGGUAUUGUUGCAUACUUGUGGGCAGCGGGAUGGGGGUGGAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG
...............(((((...(((((((...(....).))))))).....(((((((((......))))))))).)))))........... ( -31.50)
>DroSim_CAF1 8558 93 + 1
AUAUAAAUAAGGAGAGCGAGGUAUUGUUGCAUACUUGUGGGCAGCGGGAUAGGGGUGGAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG
...............(((((...(((((((...(....).))))))).....(((((((((......))))))))).)))))........... ( -31.50)
>DroEre_CAF1 8196 93 + 1
AUAUAAAUAAGGAGAGCGAGGGAUUGUUGCAUACUUGUGGGCGGCGGGGUGGGGGUGAAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG
...............(((((....((((((...(....).))))))((((((((..(((....)))..)))))))).)))))........... ( -26.40)
>DroYak_CAF1 8538 93 + 1
AUAUAAAUAAGGAGAGCGAGGGAUUGUUGCAUACUUUAGGGCGGUGGGGUGGGGGUGUAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG
.............((((((.......))))..(((((.(((((((((((..((((.....))..))..))))).))))))..))))))).... ( -25.00)
>consensus
AUAUAAAUAAGGAGAGCGAGGUAUUGUUGCAUACUUGUGGGCAGCGGGAUGGGGGUGGAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG
...............(((((...(((((((.((....)).))))))).....(((((((((......))))))))).)))))........... (-27.22 = -27.26 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:40 2006