| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,945,931 – 2,946,025 |
| Length | 94 |
| Max. P | 0.672143 |
| Location | 2,945,931 – 2,946,025 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 88.34 |
| Mean single sequence MFE | -14.77 |
| Consensus MFE | -10.21 |
| Energy contribution | -11.21 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.672143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2945931 94 + 22407834 ACUACUACCACUACUAAACCUUAAAAACCGGGCAAAAUCAAAUGCAAACAUUUGCACAAUUCUAACGCCCCCGCUGA--CCCCGUAAAAAAACGUU .............................((((.........(((((....)))))..........)))).......--...(((......))).. ( -10.51) >DroEre_CAF1 63077 93 + 1 ACUACUACCACUACUAAACCUUAAAAACCGGGCAAAAUCAAAUGCAAACAUUUGCACAACUCUAACGCCCCCGCUUCCGCCCCGCAAAA---CGGG .............................((((.........(((((....)))))..........))))..((....))((((.....---)))) ( -15.01) >DroYak_CAF1 63179 91 + 1 ACUACUACCACUACUAAACCUUAAAAACCGGGCAAAAUCAAAUGCAAACAUUUGCACGAUUUUGACGCCCCCCCUUU--CCCCGCAAAA---AGGG .............................((((((((((...(((((....))))).))))))...)))).((((((--........))---)))) ( -18.80) >consensus ACUACUACCACUACUAAACCUUAAAAACCGGGCAAAAUCAAAUGCAAACAUUUGCACAAUUCUAACGCCCCCGCUUA__CCCCGCAAAA___CGGG .............................((((.........(((((....)))))..........))))..........((((........)))) (-10.21 = -11.21 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:33 2006