Locus 1063

Sequence ID 2L_DroMel_CAF1
Location 2,944,235 – 2,944,355
Length 120
Max. P 0.812383
window1720

overview

Window 0

Location 2,944,235 – 2,944,355
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.27
Mean single sequence MFE -43.12
Consensus MFE -33.74
Energy contribution -35.30
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.84
Structure conservation index 0.78
SVM decision value 0.65
SVM RNA-class probability 0.812383
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2944235 120 - 22407834
GGAACCGAGGAGCUGGAGCUGCGGCAUCUGCUUCGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUGGCAGAGGACAACGAUGUCCUUUUGGGCGUAUUCUCAUGGAA
....(((((((((....))((((.(.((((((...(((((((((.((((...(.....)...)))))))))))))...))))))(((((....))))).....).)))))))))..)).. ( -46.50)
>DroSim_CAF1 61119 120 - 1
GGAACCGAGGAGCUGGAGCUGCGGCAUCUGCUUGGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUGGCAGAGGACAACGAUGUCCUUUUGGGCGUAUUCUCAUGGAA
....(((((((((....))((((.(.((((((...(((((((((.((((...(.....)...)))))))))))))...))))))(((((....))))).....).)))))))))..)).. ( -46.50)
>DroEre_CAF1 61480 96 - 1
-----------------------GCAUCUGCUUCGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUG-CGGAGGACACCGAUGUCCUUUUGAACGUAUUCUCAUGGAA
-----------------------((....))((((...((((((.((((...(.....)...))))))))))(((((((-(((((((((....))))))).....))))))))).)))). ( -35.20)
>DroYak_CAF1 61576 114 - 1
GGUACCGAGGAG------CUGCGGCAUCUGCAUCGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUGGCAGAGGACAACGAUGUCCUUUUGGGCGUAUUCUCAUGGAA
....(((((((.------.((((.(.(((((....(((((((((.((((...(.....)...)))))))))))))....)))))(((((....))))).....).)))))))))..)).. ( -44.30)
>consensus
GGAACCGAGGAG______CUGCGGCAUCUGCUUCGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUGGCAGAGGACAACGAUGUCCUUUUGGGCGUAUUCUCAUGGAA
......(((((...............((((((...(((((((((.((((...(.....)...)))))))))))))...))))))(((((....)))))...........)))))...... (-33.74 = -35.30 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:32 2006