Locus 1061

Sequence ID 2L_DroMel_CAF1
Location 2,943,586 – 2,943,690
Length 104
Max. P 0.560257
window1714

overview

Window 4

Location 2,943,586 – 2,943,690
Length 104
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 85.33
Mean single sequence MFE -33.40
Consensus MFE -24.61
Energy contribution -24.99
Covariance contribution 0.38
Combinations/Pair 1.10
Mean z-score -1.48
Structure conservation index 0.74
SVM decision value 0.05
SVM RNA-class probability 0.560257
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2943586 104 + 22407834
AAGCUUUUCCUCUGGCCAA-----CUGGUCGUCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUUCUUG---GUUGGGGGCAGGGA-AGUUCCUGCGA
.........(((..(((((-----.(((.......)))........(((((...((((.........))))..)))))...)))---))..)))((((((.-...)))))).. ( -33.00)
>DroSim_CAF1 60453 108 + 1
AAGCUUCUCCACUGGCCGA-----CUCGUCGUCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUUGCUGGCGGUUGGGGGCAGGGAAAGUUCCUGCGA
......(((((.(.(((((-----(.....))).............(((((...((((.........))))..))))).....))).).)))))(((((((...))))))).. ( -34.60)
>DroEre_CAF1 60843 104 + 1
AAGCUUUUCCUCCGCUCGACUCGACUCGCCGUCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUU-------GU-GGGGGCAGGA-AAGUUCCUCUGA
.((((((((((((((.......(((.....))).............(((((...((((.........))))..)))))..-------))-)))))...))-)))))....... ( -27.10)
>DroYak_CAF1 60922 107 + 1
AAGCUUUUCCUCUGGCCGACUCGACUCGUCGCCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUUA------GUGGGGGGCAGGAAAAGUUCCUCCGA
.((((((((((......(((.......)))((((((((((......(((((...((((.........))))..)))))..)------)))))))))))))))))))....... ( -38.90)
>consensus
AAGCUUUUCCUCUGGCCGA_____CUCGUCGUCUUCCAUUUAUUUUCGGUGACGUGCAUAAACUAUUUGCAAGCACUGUU_______GUUGGGGGCAGGAAAAGUUCCUCCGA
.(((((((((...(((...........)))((((((.((.......(((((...((((.........))))..))))).........)).)))))).)))))))))....... (-24.61 = -24.99 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:27 2006