| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,938,603 – 2,938,711 |
| Length | 108 |
| Max. P | 0.535967 |
| Location | 2,938,603 – 2,938,711 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 85.26 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -20.05 |
| Energy contribution | -19.83 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2938603 108 + 22407834 GUAGACUGUGGCAAUCAACAGUGGCAACAAAAAAAAAAAA---------AGAAUGUGGAACAUACAAUUGUUGCCAACCGCAAAACUUUUGUCGCUCGUCACUGGCUUUUGUUGAAA ....(((((........)))))..((((((((.....(((---------((..(((((((((......)))).....)))))...)))))((((........))))))))))))... ( -21.30) >DroEre_CAF1 55948 115 + 1 GUAGACU--GGCAAUCAACAGUGGCAACAAUAAAAAAGGAAAAAAGAAGAAAAUGUGGAACAAACAAUUGUUGCCAACCGCAAAACUUUUGUCGCUCGUCACUGGCUUUUGUUGAAA .......--(((((....(((((((..(.........)((.(((((.........((((((((....))))).))).........))))).))....)))))))....))))).... ( -21.27) >DroYak_CAF1 55857 105 + 1 GUAGACU--GGCAAUCAACAGUGGCAACAGAAA----------CAAAAAAAAAUGUGGAACAAACAAUUGUUGCCAACCACAAAACUUUUGUCGCUCGUCACUGGCUUUUGUUGAAA .......--(((((....(((((((...((..(----------(((((.....(((((....(((....))).....)))))....))))))..)).)))))))....))))).... ( -25.30) >consensus GUAGACU__GGCAAUCAACAGUGGCAACAAAAAAAAA__A____A_AA_AAAAUGUGGAACAAACAAUUGUUGCCAACCGCAAAACUUUUGUCGCUCGUCACUGGCUUUUGUUGAAA .........(((((....(((((((..............................(((((((......)))).)))...((((.....)))).....)))))))....))))).... (-20.05 = -19.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:18 2006