| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,932,725 – 2,932,842 |
| Length | 117 |
| Max. P | 0.849237 |
| Location | 2,932,725 – 2,932,842 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.71 |
| Mean single sequence MFE | -24.19 |
| Consensus MFE | -13.73 |
| Energy contribution | -14.97 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2932725 117 - 22407834 UUAAAGCUGCAACCACC---CACUGAGACCACCCAGUUGUACCAGCAAACAGUCACUUCCGGUUGCCUUCAUCUUUUCACUGCGGAUUAUUGCAAUAGCAAUCCCUCGCAGUUUCCACUG ........((((((...---.((((........))))(((....))).............))))))............(((((((...(((((....)))))...)))))))........ ( -25.90) >DroSec_CAF1 50363 107 - 1 UUAAAGCUGCAAC-------------GACCACCCAGUUGUACCAGCAAACAGUCAUUUCCGGUUGCCUUCAUCUCUUCACUGCGGAUUAUUGCAAUAGCAAUUCUUCGCAGUUUCCACUA .....((((..((-------------(((......)))))..))))...((..(......)..)).............((((((((..(((((....)))))..))))))))........ ( -27.60) >DroSim_CAF1 51998 120 - 1 UUAAAGCUGCAACCACCACACACUGCGACCACCCAGUUGUAACAGCAAACAGUCAUUUCCGGUUGCCUUCAUCUCCUCACUGCGGAUUACUGCAAUAGCAAUUCUUCGCAGUUUCCACUA ........((((((.........((((((......))))))...((.....)).......))))))............((((((((..(.(((....))).)..))))))))........ ( -25.80) >DroEre_CAF1 52195 104 - 1 UUUAAGCUGCCACCGCC---CACUGAGACUACA-------------ACCCAGUUAUUUCCGGUUGUCUUCAUCUGUUCAUUCUGGCUUAUUGCAAUAGCAAUCCUUCGCAGUUUCUACAA ...(((((((....(((---.((.((((..(((-------------(((...........))))))..)).)).)).......)))..(((((....))))).....)))))))...... ( -21.00) >DroYak_CAF1 52083 117 - 1 UUAAAGCUGCCACCACC---CACUGAGACUACCCAGUUUUACCAGCAAACAUUUAUUUCCGGUUGCCUUCAUCUGUUCUCUCUGGAUUAUUGCAAUAGCAAUCCUUCGCAGUUUCUACAA ...(((((((......(---((..((((.....(((........((((.(..........).))))......))).))))..)))...(((((....))))).....)))))))...... ( -20.64) >consensus UUAAAGCUGCAACCACC___CACUGAGACCACCCAGUUGUACCAGCAAACAGUCAUUUCCGGUUGCCUUCAUCUCUUCACUGCGGAUUAUUGCAAUAGCAAUCCUUCGCAGUUUCCACUA ........((((((..............................................))))))............((((((((..(((((....)))))..))))))))........ (-13.73 = -14.97 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:09 2006