| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,932,418 – 2,932,534 |
| Length | 116 |
| Max. P | 0.859293 |
| Location | 2,932,418 – 2,932,534 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.30 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -23.19 |
| Energy contribution | -23.55 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2932418 116 - 22407834 G----ACUUUGCUUUGAUUAUCUGAAGAAACUGUAGGCUAUAAAUAUUAAUUAAGGCAAGUGGAAUUAGCAGAUGAUGCUAUAAUCAGCAUCACACAUGGCUAACUUCAACGCGAGGGUU .----.((((((.((((..(((((..((..(..(..(((.(((.......))).)))..)..)..))..)))))((((((......))))))..............)))).))))))... ( -27.40) >DroSec_CAF1 50079 114 - 1 G----ACUUUGAUUUGAUUAUCUGAAGACACGGCCGCCUAUAAAUAUUAAUUAAGGCAACUGGAAUUAGCAGAUGAUGCUAUAAUCAGCAUCACACAUGGCUAACUCCA--GCGAGGGUU .----.(((((((......))).))))....((((((((.(((.......)))))))..(((((.(((((...(((((((......)))))))......))))).))))--)....)))) ( -31.50) >DroSim_CAF1 51710 118 - 1 GAGAGAGUUUGCUUUGAUUAUCUGAAGAAACGGCAGCCUAUAAAUAUUAAUUAAGGCAACUGGAAUUAGCAGAUGAUGCUAUAAUCAGCAUCACACAUGGCUAACUCCA--GCGAGGGUU ........((((((((((((((....))...((...)).........))))))))))))(((((.(((((...(((((((......)))))))......))))).))))--)........ ( -31.10) >DroEre_CAF1 51897 111 - 1 G----ACUUUGCUUUGAUUAUAUGAAAA---UGUAGCCUAUAAAUAUUAAUUAAGGCAACUGGAAUUAGCAGAUGAGGCUAUAAUCAGCAUCACACAUGGCUAACUUCA--GCGAGGGUU .----.((((((......(((((....)---))))((((.(((.......)))))))...((((.(((((...(((.(((......))).)))......))))).))))--))))))... ( -25.60) >DroYak_CAF1 51778 111 - 1 G----ACUUUGCUUUGAUUAUCUGAAAA---UGUAGCCUAUAAAUAUUAAUUAAGGCAAAUGGAAUUAGCAGAUGAGGCUAUAAUCAGCAUCACACAUGGCUAACUUCA--GCGAGGGUU .----.((((((................---....((((.(((.......)))))))...((((.(((((...(((.(((......))).)))......))))).))))--))))))... ( -23.60) >consensus G____ACUUUGCUUUGAUUAUCUGAAGA_ACUGUAGCCUAUAAAUAUUAAUUAAGGCAACUGGAAUUAGCAGAUGAUGCUAUAAUCAGCAUCACACAUGGCUAACUUCA__GCGAGGGUU ........((((((((((((...........................)))))))))))).((((.(((((...(((((((......)))))))......))))).))))........... (-23.19 = -23.55 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:08 2006