Locus 105

Sequence ID 2L_DroMel_CAF1
Location 366,868 – 366,984
Length 116
Max. P 0.870224
window153

overview

Window 3

Location 366,868 – 366,984
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 96.21
Mean single sequence MFE -29.56
Consensus MFE -26.52
Energy contribution -27.52
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.90
SVM decision value 0.87
SVM RNA-class probability 0.870224
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 366868 116 - 22407834
UGCCGCUAUUAAUUGGACAGCUCACAAGAUUGUUAGCUUCUUAAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAAUGCUUAAUUACUUGAAAGCACUCGUCUACAA
(((((.((((....(((.((((.(((....))).)))))))..))))))))).....(((((((.((((......))))......(((((..........)))))...))))))). ( -32.40)
>DroSec_CAF1 34435 116 - 1
UGCCGCUAUUAAUUGGACAGAUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAAUGCUUAAUUACUUGAAAGCACUCGUCUACCA
(((((.((((....(((.((...(((....)))...)))))..)))))))))......((((((.((((......))))......(((((..........)))))...)))))).. ( -26.20)
>DroSim_CAF1 35068 116 - 1
UGCCGCUAUUAAUUGGACAGAUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAAUGCUUAAUUACUUGAAAGCACUCGUCUACAA
(((((.((((....(((.((...(((....)))...)))))..))))))))).....(((((((.((((......))))......(((((..........)))))...))))))). ( -28.10)
>DroEre_CAF1 40896 116 - 1
UGCCGCUAUUAAUUGGACAGCUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUGAAACGCUUAAUUACUUCCAAACACUCGUCUACAA
(((((.((((....(((.((((.(((....))).)))))))..))))))))).....(((((((...(.((((..((((.....))))..........)))).)....))))))). ( -29.80)
>DroYak_CAF1 35469 116 - 1
UGCCGCUAUUAAUUGGACAGCUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAACGCUUAAUUACUUGCAAACACUCGUCUACAC
(((((.((((....(((.((((.(((....))).)))))))..))))))))).....(((((((.((((......)))).......((..........))........))))))). ( -31.30)
>consensus
UGCCGCUAUUAAUUGGACAGCUCACAAGAUUGUUAGCUUCUUGAAUACGGCAAUGAAUGUGGACCACGCUUGGCUGCGUCUAAAAUGCUUAAUUACUUGAAAGCACUCGUCUACAA
(((((.((((....(((.((((.(((....))).)))))))..))))))))).....(((((((.((((......)))).......((((..........))))....))))))). (-26.52 = -27.52 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:50 2006