Locus 1047

Sequence ID 2L_DroMel_CAF1
Location 2,928,298 – 2,928,417
Length 119
Max. P 0.748282
window1686

overview

Window 6

Location 2,928,298 – 2,928,417
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.57
Mean single sequence MFE -26.24
Consensus MFE -22.94
Energy contribution -22.70
Covariance contribution -0.24
Combinations/Pair 1.10
Mean z-score -1.37
Structure conservation index 0.87
SVM decision value 0.47
SVM RNA-class probability 0.748282
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2928298 119 + 22407834
CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUU-UUGCUUUUGGCAGUGGAACUUUUUGGCACUGCUUUCAAUAAGCCGGUGAAUUCAUUGAUAUG
.......(((((((.....(((((((((((...(((...((((...((((.......-.))))...))))))))))))))))))((((((((.....))).)))))....)))))))... ( -29.60)
>DroSec_CAF1 46058 120 + 1
CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUUUUUGCUUUUGGCAAUGGAACUUUCUGGCACUGUUUUCAAUAAGCCAGUGAAUUCAUUGAUAUG
.......(((((((.........(((((((.....(((.((((...((((.........))))...))))))))))))))(((((..............)))))......)))))))... ( -23.94)
>DroSim_CAF1 47665 120 + 1
CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUUUUUGCUUUUGGCAAUGGAACUUUCUGGCACUGUUUUCAAUAAGCCAGUGAAUUCAUUGAUAUG
.......(((((((.........(((((((.....(((.((((...((((.........))))...))))))))))))))(((((..............)))))......)))))))... ( -23.94)
>DroEre_CAF1 47636 118 + 1
CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACACGCAUAUGCUUCCGGCACACAUUU-CUGCUUUUGGCAAUGGAACUUU-UGGCACUGCCUUCAAUAAGCCAGUAAAUUCAUUGAUAUG
.......(((((((((((......((((((.....(((.((((...((((.......-.))))...))))))))))))))-))))((((.(((....))).))))......))))))... ( -25.50)
>DroYak_CAF1 47584 119 + 1
CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUU-UUGCUUUUGGCAAUGGAACUUUCUGGCACUGCCUUCAAUAAGCCAGCGAAUGCAUUGAUAUG
.......((((((((........(((((((.....(((.((((...((((.......-.))))...))))))))))))))(((((..............))))).....))))))))... ( -28.24)
>consensus
CUCAAAAAUCGAUGCCAACUUAAAAAGUUCACUCGCAUAUGCUUCCGGCACACAUUU_UUGCUUUUGGCAAUGGAACUUUCUGGCACUGCUUUCAAUAAGCCAGUGAAUUCAUUGAUAUG
.......(((((((.........(((((((.....(((.((((...((((.........))))...))))))))))))))(((((..............)))))......)))))))... (-22.94 = -22.70 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:00 2006