Locus 1046

Sequence ID 2L_DroMel_CAF1
Location 2,927,754 – 2,927,871
Length 117
Max. P 0.997347
window1685

overview

Window 5

Location 2,927,754 – 2,927,871
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 86.67
Mean single sequence MFE -29.56
Consensus MFE -24.93
Energy contribution -25.18
Covariance contribution 0.25
Combinations/Pair 1.07
Mean z-score -2.76
Structure conservation index 0.84
SVM decision value 2.84
SVM RNA-class probability 0.997347
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2927754 117 + 22407834
CGUAUACGCAGUGGAGUUUCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCAGAGUAAUGUUUUUCUUGUUGCUAGCUUAACUGCUCGACAGGGUCAACAUGUCAUACUAAUUUUA
.((((..(((((.(.....).)))))......(((((.(((((.((((((....))))))......(((((((..(((......))))))))))))))).)))))))))........ ( -32.90)
>DroSec_CAF1 45573 89 + 1
----------------------------UUUAGACAUUUUGAUAAUUGCUUCGGCGUAAUGUUUUUCCUGUUGCUAGCUUAACUGCUCGACAGGGUCAACAUGUCAUACUAAUUUUA
----------------------------....(((((.(((((....((....))...........(((((((..(((......))))))))))))))).)))))............ ( -27.70)
>DroSim_CAF1 47125 117 + 1
CGUAUACGCAGUGGAGUUUCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCGGAGUAAUGUUUUUCUUGUUGCUAGCUUAACUGCUCGACAGGGUCAACAUGUCAUACUAAUUUUA
.((((..(((((.(.....).)))))......(((((.(((((.((((((....))))))......(((((((..(((......))))))))))))))).)))))))))........ ( -32.90)
>DroEre_CAF1 47092 117 + 1
CGUAUACGCAGUGGAGUUCCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCACAGUAAUGUUUUUCUUGUUGCUAGCUUAACUCCUCGGCAGGGUCAACAUGUCAUCCUAAUUUUA
.......(((((((....)).)))))......(((((.(((((.((((((....))))))......(((((((..((.....))...)))))))))))).)))))............ ( -28.50)
>DroYak_CAF1 47044 117 + 1
CGUAUACGCAGUGGAGCUUCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCACAGUAAUGUUUUUCUUGUUGCUAGCUUAACUCCUCGGCAGGGUCAACAUGUCAUCCUAAUUUUA
.......(((((.(.....).)))))......(((((.(((((.((((((....))))))......(((((((..((.....))...)))))))))))).)))))............ ( -25.80)
>consensus
CGUAUACGCAGUGGAGUUUCAACUGCACUUUAGACAUUUUGAUAAUUGCUUCAGAGUAAUGUUUUUCUUGUUGCUAGCUUAACUGCUCGACAGGGUCAACAUGUCAUACUAAUUUUA
.......(((((.........)))))......(((((.(((((.(((((......)))))......(((((((..(((......))))))))))))))).)))))............ (-24.93 = -25.18 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:59 2006