Locus 1043

Sequence ID 2L_DroMel_CAF1
Location 2,925,266 – 2,925,378
Length 112
Max. P 0.626723
window1677

overview

Window 7

Location 2,925,266 – 2,925,378
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.17
Mean single sequence MFE -21.14
Consensus MFE -19.05
Energy contribution -19.45
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.19
SVM RNA-class probability 0.626723
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2925266 112 - 22407834
UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUGCCCUUCCAUCUCGCUCCGGCCUGAAUGCUCUCUCUCUCCCU--------CCUUCUUUCGCCGGCUAUUGUUUAAAAA
.......((((.(((((......(((((((...((...(((((......)))))..))..)))))))..((.............--------.........)).)))))))))....... ( -23.05)
>DroSec_CAF1 43411 112 - 1
UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUACUAUUCCAUCUCGCUCUGGCCAGAAUGCUCUCUAUCUCUCU--------CUCCCUUUCGCCGGCUAUUGUUUAAAAA
.......((((.(((((.........((((....((..(((......)))...)).....))))(((......)))........--------............)))))))))....... ( -18.40)
>DroSim_CAF1 44268 108 - 1
UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUACUAUUCCAUCUCGCUCUGGCCUGAAUGCUCUCUAUCUCUCU--------C----UUUCGCCGGCUAUUGUUUAAAAA
.......((((.(((((......(((((((....((..(((......)))...)).....)))))))..((.............--------.----....)).)))))))))....... ( -22.07)
>DroEre_CAF1 44402 120 - 1
UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUACCAUUCCAUCUCGCUCUGGCCUGAAUGCUCUCUCUCUCUCCCUGUCUCGCACUCUUUCGCCGGCUAUUGUUUAAAAA
.......((((.(((((......(((((((....((..(((......)))...)).....)))))))........................((........)).)))))))))....... ( -24.00)
>DroYak_CAF1 44485 108 - 1
UAGCAUUGCAAAUAGUCAACUCAUCAGACCCUUAGAAAGGAUAUCAUUCCAUCUCGCUCUGGCCUGAAUGCUCUCUCU------------CGCUCUCUUUUGCCGGCUAUUGUUUAAAAA
((((...(((((...........((((.((....((..(((......)))...)).....)).))))..((.......------------.)).....)))))..))))........... ( -18.20)
>consensus
UAACAUUGCAAAUAGUCAACUCAUCAGGCCCUUAGAAAGGAUACCAUUCCAUCUCGCUCUGGCCUGAAUGCUCUCUCUCUCUCU________CUCUCUUUCGCCGGCUAUUGUUUAAAAA
.......((((.(((((......(((((((....((..(((......)))...)).....)))))))..((..............................)).)))))))))....... (-19.05 = -19.45 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:52 2006