Locus 104

Sequence ID 2L_DroMel_CAF1
Location 358,375 – 358,465
Length 90
Max. P 0.742248
window152

overview

Window 2

Location 358,375 – 358,465
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 90.89
Mean single sequence MFE -20.28
Consensus MFE -16.45
Energy contribution -18.07
Covariance contribution 1.61
Combinations/Pair 1.04
Mean z-score -2.36
Structure conservation index 0.81
SVM decision value 0.45
SVM RNA-class probability 0.742248
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 358375 90 + 22407834
UCUGGACAUGCGUUUCCUGACCCCCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC
..((((..(((((.((((((((........))))))))..((((((.......)))))).....)))))....))))............. ( -20.80)
>DroSec_CAF1 32363 90 + 1
UCUGGACAUUCGUUUCCUGACCCCCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC
..((((.((((((.((((((((........))))))))..((((((.......)))))).......)))))).))))............. ( -23.20)
>DroSim_CAF1 32610 90 + 1
UCUGGACAUUCGUUUCCUGACCCCCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC
..((((.((((((.((((((((........))))))))..((((((.......)))))).......)))))).))))............. ( -23.20)
>DroEre_CAF1 38800 89 + 1
UCUGGACAUUCGUUUCCUGACC-CCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUUUCUGCCCUGC
..((((.((((((.((((((((-.......))))))))..((((((.......)))))).......)))))).))))............. ( -22.90)
>DroYak_CAF1 33299 90 + 1
UCUGGACAUUCGUUUCCUGACCCCCUCACUGGCCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC
..((((.((((((.(((((.((........)).)))))..((((((.......)))))).......)))))).))))............. ( -18.20)
>DroAna_CAF1 43317 78 + 1
GCUCUA---UCGCUUC---GCCUCCGAAC------GGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAGCUCUGCCCUGC
((((..---....(((---((.(((....------)))..((((((.......)))))).......))))).....)))).......... ( -13.40)
>consensus
UCUGGACAUUCGUUUCCUGACCCCCUCACUGGUCGGGACAUAAAUUUAUUUUUAAUUUACUUAUGCGCGAAUUUCCGAUCUCUGCCCUGC
..((((.((((((.((((((((........))))))))..((((((.......)))))).......)))))).))))............. (-16.45 = -18.07 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:48 2006