Locus 1039

Sequence ID 2L_DroMel_CAF1
Location 2,922,233 – 2,922,352
Length 119
Max. P 0.997473
window1669

overview

Window 9

Location 2,922,233 – 2,922,352
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.82
Mean single sequence MFE -27.30
Consensus MFE -24.24
Energy contribution -23.88
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -2.35
Structure conservation index 0.89
SVM decision value 2.87
SVM RNA-class probability 0.997473
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2922233 119 + 22407834
AACCCACUGUUGCC-CCUCAGUUGCCGCAUGCAAUGUGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU
.......(((((((-....((((((((.(((....(((((....))))).))).)))))))).......(((((...(((((((.((....)).)))).)))))))))))))))...... ( -30.60)
>DroSec_CAF1 40498 119 + 1
AACCCACUGUUGCC-CCUCAGUUGCCGCAUGCAAUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU
.......(((((((-....(((((((((((...))))((..........))....))))))).......(((((...(((((((.((....)).)))).)))))))))))))))...... ( -27.20)
>DroSim_CAF1 41344 119 + 1
AACCCACUGUUGCC-CCUCAGUUGCCGCAUGCAAUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU
.......(((((((-....(((((((((((...))))((..........))....))))))).......(((((...(((((((.((....)).)))).)))))))))))))))...... ( -27.20)
>DroEre_CAF1 41364 120 + 1
AACCCACUGUUGCCCCCUCGGUUGCCACAUGCAAUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCUACAACGAAU
.......(((((.......((((((((.(((....(..((....))..).))).))))))))..............(((((((..((((((.....))))))..))))))).)))))... ( -26.10)
>DroYak_CAF1 41435 119 + 1
AACCCACUGUUGUC-CCUCACUUGCCACAUGCAGUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU
.......((((((.-......((((((.(((.((((..........))))))).))))))...........((((((((......((((((.....)))))))).))))))))))))... ( -25.40)
>consensus
AACCCACUGUUGCC_CCUCAGUUGCCGCAUGCAAUGCGAUUUAUAUUACUCAUUUGGCAGCUAAUUACAAAUGCCGAGCUAAUAAAUUUAAGUAUAUUAAGUGCAUUGGCAACAACAAAU
.......(((((.......((((((((.(((....(..((....))..).))).))))))))...............((((((..((((((.....))))))..))))))..)))))... (-24.24 = -23.88 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:44 2006