Locus 1037

Sequence ID 2L_DroMel_CAF1
Location 2,920,675 – 2,920,767
Length 92
Max. P 0.500000
window1666

overview

Window 6

Location 2,920,675 – 2,920,767
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 96.71
Mean single sequence MFE -10.19
Consensus MFE -9.69
Energy contribution -9.89
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.07
Structure conservation index 0.95
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2920675 92 - 22407834
AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUUUUUUUCGGCCUCCCCUCUUUUCUGCGCUGUCAAAAUUACUAUUUUAUUUG
......(((((((((((.((((............(((...........))).............)))).)))..)))))))).......... ( -10.21)
>DroSec_CAF1 38970 91 - 1
AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUU-UUUUCGGCCUCCCCUCUUUUCCGCGCUGUCAAAAUUACUAUUUUAUUUG
......(((((((((((.(((.............(((.....-.....)))..............))).)))..)))))))).......... (  -8.83)
>DroSim_CAF1 39802 90 - 1
AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCAGCUCCUUU--UUUCGGCCUCCCCUCUUUUCUGCGCUGUCAAAAUUACUAUUUUAUUUG
......(((((((((((.((((............(((.....--....))).............)))).)))..)))))))).......... ( -10.41)
>DroEre_CAF1 39888 90 - 1
AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUU--UUUCGGCUUCCCCUCUUCUCUGCGCUGUCAAAAUUACUAUUUUAUUUG
......(((((((((((.((((............(((.....--....))).............)))).)))..)))))))).......... ( -11.11)
>DroYak_CAF1 39925 90 - 1
AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUU--UUUCGGCCUCCCUUCUUUUCUGCGCUGUCAAAAUUACUAUUUUAUUUG
......(((((((((((.((((............(((.....--....))).............)))).)))..)))))))).......... ( -10.41)
>consensus
AUUAAAAGUAAUUUGCAUUGCAAAUUAAUUUUCUGCUCCUUU__UUUCGGCCUCCCCUCUUUUCUGCGCUGUCAAAAUUACUAUUUUAUUUG
......(((((((((((.((((............(((...........))).............)))).)))..)))))))).......... ( -9.69 =  -9.89 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:41 2006