| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,920,326 – 2,920,432 |
| Length | 106 |
| Max. P | 0.563071 |
| Location | 2,920,326 – 2,920,432 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -13.25 |
| Energy contribution | -13.81 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2920326 106 + 22407834 AACUGCAUAUUCCCAUUUCCUACAGUAUGUUGCUACUCUGGCAACUCUGCAUCAUUUAGAUGGCAACACCUUAUAAAAGGUGGCAACACAUAAUUAUUGGAAGAAU ...............(((((..(((...((((((.....)))))).)))((((.....))))((..((((((....))))))))..............)))))... ( -24.20) >DroSec_CAF1 38569 92 + 1 AACUCCAUAUUUCCAUUUCCUACACUGUGUUGCAA--------ACCCU-----AUUUAGAUGGCAACACCCUAUGAAAGGUGGCAACACCG-UUUAUUGGAAGAAU .........((((((...........(((((((..--------...((-----....))...)))))))...(((((.((((....)))).-)))))))))))... ( -24.00) >DroSim_CAF1 39401 92 + 1 AACUCCAUAUUUCCAUUUCCUACAGUGUGUUGCAA--------ACCCU-----GUUUAGAUGGCAACACCCUAUGAAAGGUGGCAACCCGU-UUUAUUGCAAGAAU ............((((((...((((.((.......--------)).))-----))..))))))...((((........))))((((.....-....))))...... ( -16.10) >consensus AACUCCAUAUUUCCAUUUCCUACAGUGUGUUGCAA________ACCCU_____AUUUAGAUGGCAACACCCUAUGAAAGGUGGCAACACAU_UUUAUUGGAAGAAU ...............(((((....(((((((((............((..............))...((((........))))))))))))).......)))))... (-13.25 = -13.81 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:40 2006